Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
cI HK022BBa_C0050 Version 1 (Component)cI repressor from phage HK022 (+LVA?)
BBa_K329061BBa_K329061 Version 1 (Component)[KanR] in between WT_MUT[HK022] Tn916 Arms
BBa_K329056BBa_K329056 Version 1 (Component)[KanR + LacZ] in between WT_MUT[HK022] Tn916 Arms
BBa_K329062BBa_K329062 Version 1 (Component)[KanR] in between MUT_MUT[HK022] Tn916 Arms
BBa_K329057BBa_K329057 Version 1 (Component)[KanR + LacZ] in between MUT_MUT[HK022] Tn916 Arms
BBa_K329058BBa_K329058 Version 1 (Component)[KanR] in between WT_MUT[Lambda] Tn916 Arms
BBa_K329054BBa_K329054 Version 1 (Component)[KanR + LacZ] in between WT_MUT[Lambda] Tn916 Arms
BBa_K329060BBa_K329060 Version 1 (Component)[KanR] in between MUT_MUT[Lambda] Tn916 Arms
BBa_K329055BBa_K329055 Version 1 (Component)[KanR + LacZ] in between MUT_MUT[Lambda] Tn916 Arms
BBa_K329059BBa_K329059 Version 1 (Component)[KanR] in between WT Tn916 Arms
kanRBBa_P1003 Version 1 (Component)kanamycin resistance cassette
BBa_K329053BBa_K329053 Version 1 (Component)[KanR+LacZ] in between WT Tn916 Arms
cI HK022BBa_R0050 Version 1 (Component)Promoter (HK022 cI regulated)
BBa_K329045BBa_K329045 Version 1 (Component)Right arm Tn916 - Mutant + Mutant HK022
BBa_K329050BBa_K329050 Version 1 (Component)Left arm Tn916 - Mutant + Mutant HK022
BBa_K329044BBa_K329044 Version 1 (Component)Right arm Tn916 - Wild Type + Mutant HK022
BBa_K329049BBa_K329049 Version 1 (Component)Left arm Tn916 - Wild Type + Mutant HK022
BBa_K132000BBa_K132000 Version 1 (Component)RBS+kanR+LVA
BBa_K329041BBa_K329041 Version 1 (Component)Right arm Tn916 - Wild Type
BBa_K329046BBa_K329046 Version 1 (Component)Left arm Tn916 - Wild Type
Zif23BBa_R2000 Version 1 (Component)Promoter, Zif23 regulated, test: between
BBa_K329048BBa_K329048 Version 1 (Component)Left arm Tn916 - Mutant + Mutant Lambda
cI HK022BBa_R1050 Version 1 (Component)Promoter, Standard (HK022 cI regulated) <br>
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K329047BBa_K329047 Version 1 (Component)Left arm Tn916 - Wild Type + Mutant Lambda
KanRBBa_J31003 Version 1 (Component)kanamycin resistance forward (KanF) [cf. BBa_J23012 & BBa_J31002]
BBa_J33201BBa_J33201 Version 1 (Component)E. coli chromosomal ars promoter with arsR repressor gene
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_K329051BBa_K329051 Version 1 (Component)[KanR + LacZ] cassette
BBa_K1795024BBa_K1795024 Version 1 (Component)KanR Operon under R0010
BBa_I11043BBa_I11043 Version 1 (Component)HK022 attP
BBa_K2042016BBa_K2042016 Version 1 (Component)Non-coding scar site in between RBS and gene
BBa_J72092BBa_J72092 Version 1 (Component){KanR Cassette} in BglBrick Format
BBa_K329010BBa_K329010 Version 1 (Component)RBS + Int HK022
BBa_K1583054BBa_K1583054 Version 1 (Component)Non-coding scar site in between RBS and gene
BBa_K1583053BBa_K1583053 Version 1 (Component)Non-coding scar site in between promoter and RBS
KanRBBa_P1007 Version 1 (Component)kanamycin resistance cassette
BBa_P0150BBa_P0150 Version 1 (Component)PoPS -> cI (HK022) [S0164]
BBa_K132007BBa_K132007 Version 1 (Component)kanR-LVA+lacI+PL+kanR-LVA
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
BBa_K329018BBa_K329018 Version 1 (Component)RBS + Xis-Int Tn916
BBa_K329011BBa_K329011 Version 1 (Component)RBS + Xis-Int HK022