SynBioHub

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Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Public

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

hixC
BBa_J44000 Version 1 (Component)
hixC binding site for Salmonella typhimurium Hin recombinase

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

Hin
BBa_J31000 Version 1 (Component)
DNA-invertase Hin from Salmonella typhimurium

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RE
BBa_J3101 Version 1 (Component)
Recombinational Enhancer (RE) for Hin/Hix inverting

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His-Stop
BBa_K133133 Version 1 (Component)
His affinity tag-stop

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RGD-His-St
BBa_K133036 Version 1 (Component)
RGD-His affinity tag-Stop

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BBa_K091137
BBa_K091137 Version 1 (Component)
RBS+Mnt+TT

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BBa_I13001
BBa_I13001 Version 1 (Component)
RBS B0030 w/ YFP (-LVA) TT

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BBa_K091171
BBa_K091171 Version 1 (Component)
pBAD+RBS+cI+TT

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Hin LVA
BBa_J31001 Version 1 (Component)
DNA invertase Hin tagged with LVA

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BBa_I13002
BBa_I13002 Version 1 (Component)
RBS B0031 w/ YFP (-LVA) TT

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BBa_K574007
BBa_K574007 Version 1 (Component)
lasR + TT

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BBa_S03515
BBa_S03515 Version 1 (Component)
Hin : TT

Public

BBa_S03591
BBa_S03591 Version 1 (Component)
AraCPCrev : TT

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BBa_K844000
BBa_K844000 Version 1 (Component)
10x-Histidine (10x-His) Tag with double stop codon (TAATAA)

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ccdB-TT
BBa_K1075029 Version 1 (Component)
ccdB-TT

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BBa_K199116
BBa_K199116 Version 1 (Component)
RBS-RFP-TT-pLac-RBS-LuxR-TT

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BBa_K199150
BBa_K199150 Version 1 (Component)
pT7-RBS-GFP-TT

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BBa_K876038
BBa_K876038 Version 1 (Component)
TT-pLasR-araC

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His
BBa_K157011 Version 1 (Component)
His affinity tag; Freiburg standard

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IBMc392
IBMc392 Version 1 (Component)
pSB3K3-TT-PBAD-T

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BBa_S03537
BBa_S03537 Version 1 (Component)
pLac-RBS-Hin-TT

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IBMc395
IBMc395 Version 1 (Component)
pSB3K3-TT-PBAD(SapI-)-B30-His-FKBP-14aa-T7RNAP(181+)-T

Public

IBMc397
IBMc397 Version 1 (Component)
pSB3K3-TT-PBAD(SapI-)-B30-His-acVHH-15aa-T7RNAP(181+)-T

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BBa_K1022113
BBa_K1022113 Version 1 (Component)
pBAD: Ulp: TT

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SspB-TT
BBa_K1075000 Version 1 (Component)
SspB-TT

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BBa_S03516
BBa_S03516 Version 1 (Component)
TT : RE

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BBa_K1075038
BBa_K1075038 Version 1 (Component)
RBS32-MazF-TT

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rPlac+TT
BBa_K093004 Version 1 (Component)
Convergent Promoter System: Reverse Module: rPlac+TT

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BBa_K1022123
BBa_K1022123 Version 1 (Component)
pTet: cI: TT : pcI: Ulp : Lysis

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BBa_K1075037
BBa_K1075037 Version 1 (Component)
MazF-TT

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BBa_B0053
BBa_B0053 Version 1 (Component)
Terminator (His)

Public

BBa_K091145
BBa_K091145 Version 1 (Component)
pBAD+RBS+TetR+TT

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BBa_K091204
BBa_K091204 Version 1 (Component)
Prom-LuxR-TT

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BBa_K576008
BBa_K576008 Version 1 (Component)
IN2-GFP2-TT

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BBa_K199113
BBa_K199113 Version 1 (Component)
RFP-TT-pLac-RBS-LuxR-TT

Public

BBa_J44007
BBa_J44007 Version 1 (Component)
pLac-RBS-Hin-TT-HixC-pBADrev-HixC-RBS-RE-TT-TetF

Public

BBa_J44005
BBa_J44005 Version 1 (Component)
pLac-RBS-Hin-TT-HixC-pBAD-HixC-RBS-TetF-TT-RE

Public

BBa_K1075005
BBa_K1075005 Version 1 (Component)
RBS-SspB-TT

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BBa_K091228
BBa_K091228 Version 1 (Component)
cI+TT

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BBa_K1075004
BBa_K1075004 Version 1 (Component)
SspB-TT

Public

BBa_K091220
BBa_K091220 Version 1 (Component)
RBS+TetA(C)+TT

Public

BBa_K1051003
BBa_K1051003 Version 1 (Component)
Stop codon free GFP in RFC[23] standard

Public

BBa_K175017
BBa_K175017 Version 1 (Component)
TetR+TT

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BBa_K091160
BBa_K091160 Version 1 (Component)
pMnt/Tet-RBS-GFP-TT

Public

BBa_K175019
BBa_K175019 Version 1 (Component)
cI+TT

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