Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_B0012BBa_B0012 Version 1 (Component)TE from coliphageT7
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A3 AraBBa_K627014 Version 1 (Component)Plasmid backbone pSB1A3 carrying the arabinose induction system
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
AraBBa_K808000 Version 1 (Component)araC-Pbad - Arabinose inducible regulatory promoter/repressor unit
pSB1A3 lacBBa_K627015 Version 1 (Component)Plasmid backbone pSB1A3 carrying the lac operon induction system
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
BBa_I13507BBa_I13507 Version 1 (Component)Screening plasmid intermediate
ScreeningpSB1A10 Version 1 (Component)Screening Plasmid v1.0
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
pSB1T3pSB1T3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB3K3pSB3K3 Version 1 (Component)Low to medium copy BioBrick standard vector
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
pSB2K3pSB2K3 Version 1 (Component)Inducible copy number BioBrick plasmid
pSB1AK8pSB1AK8 Version 1 (Component)Eukaryotic terminator vector (formerly BBa_J52017)
AraC_14_3CBBa_K627011 Version 1 (Component)Fusion part of pBAD arabinose-inducible induction system and the HRV 14_3C protease
T1_TET1_TE Version 1 (Component) pSB4A1pSB4A1 Version 1 (Component)pSB4A1 (Replaced by pSB4A5)
pSB6A1pSB6A1 Version 1 (Component)pBR322 converted to BioBrick vector (formally BBa_I739201)
BBa_I13504BBa_I13504 Version 1 (Component)Screening plasmid intermediate
pSB1AC0pSB1AC0 Version 1 (Component)pSB1AC0
pSB1C4pSB1C4 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A30BBa_K1362091 Version 1 (Component)pSB1A30: High copy BioBrick cloning/expression backbone carrying Amp resitance
pSB4A5pSB4A5 Version 1 (Component)Low copy BioBrick standard vector
BBa_I745000BBa_I745000 Version 1 (Component)Backbone TRE plasmid