Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

LysA
BBa_K284001 Version 1 (Component)
Lysozyme from Gallus gallus

BBa_K1184000
BBa_K1184000 Version 1 (Component)
KillerRed

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K584000
BBa_K584000 Version 1 (Component)
pBAD + GFP generator

BBa_B0025
BBa_B0025 Version 1 (Component)
double terminator (B0015), reversed

BBa_K2084000
BBa_K2084000 Version 1 (Component)
T3 Promoter

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

pSC101
BBa_I50041 Version 1 (Component)
pSC101 origin of replication, reverse

BBa_K084007
BBa_K084007 Version 1 (Component)
Lac repressible lasI generator (No LVA )

BBa_K081000
BBa_K081000 Version 1 (Component)
Mux CH0

BBa_K294000
BBa_K294000 Version 1 (Component)
This is the coding sequence for the heat shock protein hsp15 from E. coli

BBa_K284000
BBa_K284000 Version 1 (Component)
Lactate Permease from Kluyveromyces lactis

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K284003
BBa_K284003 Version 1 (Component)
Partial DLD Promoter from Kluyveromyces lactis

BBa_K284002
BBa_K284002 Version 1 (Component)
JEN1 Promoter from Kluyveromyces lactis

BBa_K248000
BBa_K248000 Version 1 (Component)
phoA (alkaline phosphatase) promoter

BBa_K264000
BBa_K264000 Version 1 (Component)
Modular UP-element Design 1

BBa_K284030
BBa_K284030 Version 1 (Component)
delete

BBa_K284008
BBa_K284008 Version 1 (Component)
tra operon promoter (Py)

BBa_K184000
BBa_K184000 Version 1 (Component)
Silintaphin-1 + gs linker partA

BBa_K288000
BBa_K288000 Version 1 (Component)
t3 promotor

BBa_K2184000
BBa_K2184000 Version 1 (Component)
Classical Cas9 endonuclease for knock-out of target genes

BBa_K284007
BBa_K284007 Version 1 (Component)
tra operon promoter (Py)

BBa_K214000
BBa_K214000 Version 1 (Component)
Human Serum Amyloid A2

BBa_K284009
BBa_K284009 Version 1 (Component)
Forward Primer to BBa_K284002

BBa_K284005
BBa_K284005 Version 1 (Component)
Reverse Primer to BBa_K284000

BBa_K284010
BBa_K284010 Version 1 (Component)
Reverse Primer to BBa_K284002

BBa_K284004
BBa_K284004 Version 1 (Component)
Forward Primer to BBa_K284000

phaAB
BBa_K282000 Version 1 (Component)
phaAB

BBa_K084002
BBa_K084002 Version 1 (Component)
Venus YFP with RBS (yeast-optimized)

BBa_K284020
BBa_K284020 Version 1 (Component)
EYFP regulated by lactate responsive promoter (JEN1)

pT7+pHOA
BBa_K784000 Version 1 (Component)
pT7+RBS+Alkaline Phosphatase (pHO)+Terminator

BBa_K283000
BBa_K283000 Version 1 (Component)
pTet-rbs-lpp_ompA_eGFP_streptavidin-double Terminators

BBa_K084005
BBa_K084005 Version 1 (Component)
LasR generator

BBa_K284060
BBa_K284060 Version 1 (Component)
FinP under constitutive promoter

FLAG
BBa_K128000 Version 1 (Component)
FLAG affinity tag

BBa_K284090
BBa_K284090 Version 1 (Component)
Downstream construction flanking FSTK gene