Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_K082003
BBa_K082003 Version 1 (Component)
GFP(+LVA)

LysA
BBa_K284001 Version 1 (Component)
Lysozyme from Gallus gallus

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B0025
BBa_B0025 Version 1 (Component)
double terminator (B0015), reversed

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

BBa_K584003
BBa_K584003 Version 1 (Component)
Lambda cI and LuxR regulated - hybrid promoter + GFP generator

pSC101
BBa_I50041 Version 1 (Component)
pSC101 origin of replication, reverse

BBa_K264003
BBa_K264003 Version 1 (Component)
Modular UP-element Design 4

BBa_K284003
BBa_K284003 Version 1 (Component)
Partial DLD Promoter from Kluyveromyces lactis

BBa_K084007
BBa_K084007 Version 1 (Component)
Lac repressible lasI generator (No LVA )

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K284002
BBa_K284002 Version 1 (Component)
JEN1 Promoter from Kluyveromyces lactis

BBa_K784003
BBa_K784003 Version 1 (Component)
T3 promoter

BBa_K287003
BBa_K287003 Version 1 (Component)
Chloride channel protein

BBa_K284033
BBa_K284033 Version 1 (Component)
finP misc_RNA from Plasmid F

BBa_K124003
BBa_K124003 Version 1 (Component)
Bacteriophage 21 Lysis Cassette S, R, and Rz (PVJ4)

BBa_K284000
BBa_K284000 Version 1 (Component)
Lactate Permease from Kluyveromyces lactis

BBa_K2184003
BBa_K2184003 Version 1 (Component)
Guid RNA for NaCl & Sour flavor

BBa_K274003
BBa_K274003 Version 1 (Component)
Vio operon ABDE

BBa_K284030
BBa_K284030 Version 1 (Component)
delete

BBa_K284008
BBa_K284008 Version 1 (Component)
tra operon promoter (Py)

BBa_K289003
BBa_K289003 Version 1 (Component)
GSH

BBa_K284007
BBa_K284007 Version 1 (Component)
tra operon promoter (Py)

BBa_K214003
BBa_K214003 Version 1 (Component)
ITGA4 - B epitope

BBa_K174003
BBa_K174003 Version 1 (Component)
Heritable, Tunable, Stochastic Switch

BBa_K284013
BBa_K284013 Version 1 (Component)
Forward Primer to BBa_K284001

BBa_K284009
BBa_K284009 Version 1 (Component)
Forward Primer to BBa_K284002

BBa_K284005
BBa_K284005 Version 1 (Component)
Reverse Primer to BBa_K284000

BBa_K284004
BBa_K284004 Version 1 (Component)
Forward Primer to BBa_K284000

BBa_K284023
BBa_K284023 Version 1 (Component)
EYFP regulated by constitutive promoter Adh1

BBa_K089003
BBa_K089003 Version 1 (Component)
phaC gene

BBa_K084002
BBa_K084002 Version 1 (Component)
Venus YFP with RBS (yeast-optimized)

BBa_K248003
BBa_K248003 Version 1 (Component)
pNirK-RBS-TetR

BBa_K104003
BBa_K104003 Version 1 (Component)
RBS_spaR

BBa_K1084003
BBa_K1084003 Version 1 (Component)
promoter 3

BBa_K084003
BBa_K084003 Version 1 (Component)
3OC6HSL -> Venus YFP

BBa_K2084003
BBa_K2084003 Version 1 (Component)
pT7 Toehold Regulated T3 RNAP