Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_B0012BBa_B0012 Version 1 (Component)TE from coliphageT7
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
rrnOrrnO_ter Version (Component) Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K2100069BBa_K2100069 Version 1 (Component)pEXPR TRE: L7Ae
TerTer Version (Component) CreBBa_J61047 Version 1 (Component)Cre DNA recombinase
T1_TET1_TE Version 1 (Component) BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
pREBBa_K116603 Version 1 (Component)pRE promoter from λ phage
BBa_K1179016BBa_K1179016 Version 1 (Component)L7Ae (Transcriptional level repressor)
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
BBa_K2100038BBa_K2100038 Version 1 (Component)pEXPR TRE - TALER21
BBa_K2100075BBa_K2100075 Version 1 (Component)pEXPR TRE: mKate
BBa_K2100079BBa_K2100079 Version 1 (Component)pEXPR TRE: tagBFP
BBa_K2100037BBa_K2100037 Version 1 (Component)pEXPR TRE - TALER14
BBa_K2100036BBa_K2100036 Version 1 (Component)pEXPR TRE-BM3R1
rrnBrrnB_T1_ter Version (Component) XreBO_10661 Version 1 (Component) BBa_K2100081BBa_K2100081 Version 1 (Component)pEXPR Backbone
BBa_K1391144BBa_K1391144 Version 1 (Component)pEXPR TRE:BACE2
BBa_K1391113BBa_K1391113 Version 1 (Component)pEXPR hEF1a:PirB_TCS_Gal4VP16
BBa_K1391143BBa_K1391143 Version 1 (Component)pEXPR Hef1a:BACE1
BBa_K1391137BBa_K1391137 Version 1 (Component)pEXPR TRE:miRNAg3
BBa_K1391136BBa_K1391136 Version 1 (Component)pEXPR TRE:miRNAg2
BBa_K1391138BBa_K1391138 Version 1 (Component)pEXPR TRE:miRNAg4
BBa_K1391135BBa_K1391135 Version 1 (Component)pEXPR TRE:miRNAg1
BBa_K2100062BBa_K2100062 Version 1 (Component)pEXPR EGSH: TP901
BBa_K2100032BBa_K2100032 Version 1 (Component)pEXPR pHybrid:eYFP
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K1391115BBa_K1391115 Version 1 (Component)pEXPR TRE:Cofilin-TEVp
BBa_K1391114BBa_K1391114 Version 1 (Component)pEXPR hEF1a: LilrB_TCS_Gal4VP16
BBa_K2100052BBa_K2100052 Version 1 (Component)pEXPR pERE6:TP901
BBa_K2100034BBa_K2100034 Version 1 (Component)pEXPR pERE5:TALER14