ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
pBad/araCBBa_I0500 Version 1 (Component)Inducible pBad/araC promoter
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K912033BBa_K912033 Version 1 (Component)pH Inducible Lysis System(ns)
AraBBa_K808000 Version 1 (Component)araC-Pbad - Arabinose inducible regulatory promoter/repressor unit
BBa_K912034BBa_K912034 Version 1 (Component)pH Inducible GFP system (ns)
BBa_K117000BBa_K117000 Version 1 (Component)Lysis gene (promotes lysis in colicin-producing bacteria strain)
BBa_K912031BBa_K912031 Version 1 (Component)pH Inducible Lysis System(m)
BBa_K912030BBa_K912030 Version 1 (Component)pH Inducible Lysis System(w)
BBa_K912032BBa_K912032 Version 1 (Component)pH Inducible Lysis System(s)
BBa_K914003BBa_K914003 Version 1 (Component)L-rhamnose-inducible promoter (pRha)
BBa_K112808BBa_K112808 Version 1 (Component)Enterobacteria phage T4 Lysis Device - no promoter
InteinBBa_K300004 Version 1 (Component)Engineered pH-inducible intein (codon optimized for E. coli) - internal domain
BBa_K912035BBa_K912035 Version 1 (Component)pH Inducible GFP system (s)
BBa_K912036BBa_K912036 Version 1 (Component)pH Inducible GFP system (m)
BBa_K912037BBa_K912037 Version 1 (Component)pH Inducible GFP system (w)
BBa_K1973033BBa_K1973033 Version 1 (Component)nahR-Psal (inducible promoter)
BBa_K209019BBa_K209019 Version 1 (Component)Aar1 A-B part, PLCdelta-PH (Dictyostelium discoideum)
BBa_K358006BBa_K358006 Version 1 (Component)lambda lysis cassette with terminator
BBa_K173007BBa_K173007 Version 1 (Component)aTc inducible system (aTc->PoPS) with J23100 promoter
BBa_K174001BBa_K174001 Version 1 (Component)Arabinose inducible system
LysisBBa_K137126 Version 1 (Component)Lambda Lysis Cassette
BBa_K173015BBa_K173015 Version 1 (Component)HSL inducible lysis device
Ph-sBBa_K143015 Version 1 (Component)Promoter hyper-spank for B. subtilis
BBa_K1419000BBa_K1419000 Version 1 (Component)Arabinose inducible lysis casette
BBa_J107014BBa_J107014 Version 1 (Component)Heat-inducible lysis device