SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B1001
BBa_B1001 Version 1 (Component)
Terminator (artifical, small, %T~=90)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

araC
BBa_C0080 Version 1 (Component)
araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)

Ara
BBa_K808000 Version 1 (Component)
araC-Pbad - Arabinose inducible regulatory promoter/repressor unit

BBa_B0016
BBa_B0016 Version 1 (Component)
Terminator (T7 RNAP specific, T_Phi)

BBa_B1002
BBa_B1002 Version 1 (Component)
Terminator (artificial, small, %T~=85%)

BBa_K1325016
BBa_K1325016 Version 1 (Component)
small RNAs regulatory system

cheZ
BBa_K629003 Version 1 (Component)
cheZ, chemotaxis regulator, protein phosphatase for CheY

BBa_K115002
BBa_K115002 Version 1 (Component)
RNA thermometer (FourU)

BBa_K864440
BBa_K864440 Version 1 (Component)
Small RNA spot42

BBa_I741005
BBa_I741005 Version 1 (Component)
XylR Transcriptional Regulator Right Facing

BBa_K581005
BBa_K581005 Version 1 (Component)
Pc+sgrS(wt)+Terminator (small RNA regulator, conjugate part of ptsG(wt))

BBa_K737031
BBa_K737031 Version 1 (Component)
Spot42 based small RNA1

BBa_K737032
BBa_K737032 Version 1 (Component)
Spot42 based small RNA2

BBa_K115001
BBa_K115001 Version 1 (Component)
RNA thermometer (ROSE)

BBa_B1005
BBa_B1005 Version 1 (Component)
Terminator (artificial, small, %T~=25%

BBa_I2032
BBa_I2032 Version 1 (Component)
T7 RNA polymerase

LacI
BBa_K143033 Version 1 (Component)
LacI (Lva^-, N-terminal deletion) regulatory protein

BBa_B1003
BBa_B1003 Version 1 (Component)
Terminator (artificial, small, %T~=80)

BBa_K252000
BBa_K252000 Version 1 (Component)
MicA small RNA

STAR
BBa_K1893013 Version 1 (Component)
Small transcription activating RNA (STAR)

BBa_K737058
BBa_K737058 Version 1 (Component)
Spot42 is a multitarget small RNA that mediates the discoordinate expression of the E.coli galactose

RcsB
BBa_K200000 Version 1 (Component)
Colanic acid global regulator -> RcsB

BBa_K581000
BBa_K581000 Version 1 (Component)
sgrS1+Terminator (small RNA regulator, conjugate part of ptsG1)

BBa_K228008
BBa_K228008 Version 1 (Component)
AraC regulatory protein

ChiXR
BBa_K564010 Version 1 (Component)
small RNA regulating ChiX

BBa_R0182
BBa_R0182 Version 1 (Component)
T7 RNAP promoter

BBa_K252006
BBa_K252006 Version 1 (Component)
MicF small RNA

BBa_K252001
BBa_K252001 Version 1 (Component)
MicC small RNA

BBa_K252005
BBa_K252005 Version 1 (Component)
DicF small RNA

BBa_K252003
BBa_K252003 Version 1 (Component)
GcvB small RNA

BBa_K252004
BBa_K252004 Version 1 (Component)
Sgrs small RNA

BBa_K252002
BBa_K252002 Version 1 (Component)
MicF small RNA

BBa_K115003
BBa_K115003 Version 1 (Component)
RNA thermometer (PrfA)

BBa_K1420004
BBa_K1420004 Version 1 (Component)
merR family transcriptional regulator, regulatory protein for mer operon

BBa_J75000
BBa_J75000 Version 1 (Component)
small RNA transRAJ11

BBa_I712011
BBa_I712011 Version 1 (Component)
CUb (split ubiquitin system)

Subtilin P
BBa_K104001 Version 1 (Component)
Sensor for small peptide Subtilin

MicF
BBa_K1766000 Version 1 (Component)
MicF non-coding regulatory RNA

BBa_K2110006
BBa_K2110006 Version 1 (Component)
TPA regulatory gene expression system

BBa_K632003
BBa_K632003 Version 1 (Component)
Ho1-PcyA-cph8, regulatory system

BBa_B1004
BBa_B1004 Version 1 (Component)
Terminator (artificial, small, %T~=55)

BBa_K1331002
BBa_K1331002 Version 1 (Component)
RhlR regulatory protein from P. aeruginosa SQ6