CBDclosBBa_K863111 Version 1 (Component)Cellulose binding domain of C. cellulovorans cellulose binding protein gene (Freiburg-Standard)
BBa_K737033BBa_K737033 Version 1 (Component)galK is the leader sequence of galactokinase (GalK)
BBa_K739003BBa_K739003 Version 1 (Component)promoter of raxRH + RBS + mRFP
BBa_K873003BBa_K873003 Version 1 (Component)conjugative transfer of RFG
BBa_K737048BBa_K737048 Version 1 (Component)The leading sequence involved in the nanC transcript which can act as the target of the sRNA, spot42
BBa_K737049BBa_K737049 Version 1 (Component)The leading sequence involved in the YtfJ transcript which can act as the target of the sRNA, spot42
BBa_K737050BBa_K737050 Version 1 (Component)The leading sequence involved in the SrlA transcript which can act as the target of the sRNA, spot42
BBa_K777101BBa_K777101 Version 1 (Component)flhDC operon under the control of constitutive promoter J23100
BBa_K750008BBa_K750008 Version 1 (Component)Quorum sensing system based on LuxI and LuxR to control the expression of parts behind
P-alsTBBa_K818300 Version 1 (Component)Promoter alsT, repressed by TnrA during conversion of NH4 to Glutamine in B. subtilis.
BBa_K777102BBa_K777102 Version 1 (Component)flhDC operon under the control of constitutive promoter J23104
BBa_K777103BBa_K777103 Version 1 (Component)flhDC operon under the control of constitutive promoter J23105
BBa_K777104BBa_K777104 Version 1 (Component)flhDC operon under the control of constitutive promoter J23106
BBa_K777105BBa_K777105 Version 1 (Component)flhDC operon under the control of constitutive promoter J23109
BBa_K777106BBa_K777106 Version 1 (Component)flhDC operon under the control of constitutive promoter J23112
BBa_K777107BBa_K777107 Version 1 (Component)flhDC operon under the control of constitutive promoter J23113
BBa_K777108BBa_K777108 Version 1 (Component)flhDC operon under the control of constitutive promoter J23114
BBa_K769002BBa_K769002 Version 1 (Component)Kinase domain of EnvZ
CBDcex(T7)BBa_K863102 Version 1 (Component)Cellulose binding Domain of C. Fimi Exoglucanase with T7, RBS, GS-Linker (Freiburg-Standard)
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Intein_assisted_Bisection_MappingIntein_assisted_Bisection_Mapping_collection Version 1 (Collection)Split inteins are powerful tools for seamless ligation of synthetic split proteins. Yet, their use remains limited because the already intricate split site identification problem is often complicated by the requirement of extein junction sequences. To address this, we augmented a mini-Mu transposon-based screening approach and devised the intein-assisted bisection mapping (IBM) method. IBM robustly revealed clusters of split sites on five proteins, converting them into AND or NAND logic gates. We further showed that the use of inteins expands functional sequence space for splitting a protein. We also demonstrated the utility of our approach over rational inference of split sites from secondary structure alignment of homologous proteins. Furthermore, the intein inserted at an identified site could be engineered by the transposon again to become partially chemically inducible, and to some extent enabled post-translational tuning on host protein function. Our work offers a generalizable and systematic route towards creating split protein-intein fusions and conditional inteins for protein activity control.
BBa_K098984BBa_K098984 Version 1 (Component)lac inducible mtrB (high expression of QPI)
BBa_K098983BBa_K098983 Version 1 (Component)lac inducible mtrB (low expression of QPI)
BBa_K157002BBa_K157002 Version 1 (Component)Transmembrane region of the EGF-Receptor (ErbB-1)
SEGASEGA_collection Version 1 (Collection)In the Standardized Genome Architecture (SEGA), genomic integration of DNA fragments is enabled by λ-Red recombineering and so-called landing pads that are a common concept in synthetic biology and typically contain features that i) enable insertion of additional genetic elements and ii) provide well-characterized functional parts such as promoters and genes, and iii) provides insulation against genome context-dependent effects. The SEGA landing pads allow for reusable homology regions and time-efficient construction of parallel genetic designs with a minimal number of reagents and handling steps. SEGA bricks, typically synthetic DNA or PCR fragments, are integrated on the genome simply by combining the two reagents (i.e. competent cells and DNA), followed by incubation steps, and successful recombinants are identified by visual inspection on agar plates. The design of the SEGA standard was heavily influenced by the Standard European Vector Architecture (SEVA). SEGA landing pads typically hosts two major genetic “control elements” that influence gene expression on the transcriptional (C1), and translational (C2) level. Furthermore, landing pads contain gadgets such as selection and counterselection markers.
BBa_K157003BBa_K157003 Version 1 (Component)Anti-NIP singlechain Fv-Fragment
BBa_K125810BBa_K125810 Version 1 (Component)slr2016 signal sequence + GFP fusion for secretion of GFP
OriTRBBa_J01003 Version 1 (Component)OriT-R (Origin of transfer for the R-plasmid nic region)
BBa_K156009BBa_K156009 Version 1 (Component)OFP (orange fluorescent protein)
BBa_K116510BBa_K116510 Version 1 (Component)GFP under control of pOmpf promoter(K116500+E0240)
BBa_K136061BBa_K136061 Version 1 (Component)fliL promoter + WT RBS ( K136009) - GFP
BBa_K136062BBa_K136062 Version 1 (Component)fliL promoter + WT RBS ( K136009) - GFP
BBa_K136063BBa_K136063 Version 1 (Component)fliL promoter + WT RBS ( K136009) - EnvZ*
BBa_K136064BBa_K136064 Version 1 (Component)fliL promoter + WT RBS ( K136009) - EnvZ*
BBa_K136065BBa_K136065 Version 1 (Component)flhB promoter + WT RBS - GFP
BBa_K142024BBa_K142024 Version 1 (Component)IPTG-on tetracycline-off pulse generator with LacI mutant (R197A) and TetR expression cassette
BBa_K142025BBa_K142025 Version 1 (Component)IPTG-on tetracycline-off pulse generator with LacI mutant (R197F) and TetR expression cassette
BBa_K142026BBa_K142026 Version 1 (Component)IPTG-on tetracycline-off pulse generator with LacI mutant (T276A) and TetR expression cassette
BBa_K142027BBa_K142027 Version 1 (Component)IPTG-on tetracycline-off pulse generator with LacI mutant (T276F) and TetR expression cassette
BBa_K142028BBa_K142028 Version 1 (Component)IPTG-on tetracycline-off pulse generator with LacI mutant (R197A, T276A)/TetR expression cassette
BBa_K142029BBa_K142029 Version 1 (Component)IPTG-on tetracycline-off pulse generator with LacI mutant (R197A, T276F)/TetR expression cassette
BBa_K142030BBa_K142030 Version 1 (Component)IPTG-on tetracycline-off pulse generator with LacI mutant (R197F, T276A)/TetR expression cassette
BBa_K142031BBa_K142031 Version 1 (Component)IPTG-on tetracycline-off pulse generator with LacI mutant (R197F, T276F)/TetR expression cassette
BBa_K116501BBa_K116501 Version 1 (Component)RpaA(regulator of phycobilisome-associated)
BBa_K116503BBa_K116503 Version 1 (Component)GFP under control of pOmpC promoter.R0082+E0240
BBa_K116520BBa_K116520 Version 1 (Component)GFP under control of RpaA activated pOmpF promoter
BBa_K116523BBa_K116523 Version 1 (Component)GFP under control of RpaA activated pOmpC promoter
BBa_K116000BBa_K116000 Version 1 (Component)A homolog of OCT3 (organic cation transporter 3) from E coli. K12
BBa_K116002BBa_K116002 Version 1 (Component)measurement of NhaA promoter activity