Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

cI lam
BBa_R0051 Version 1 (Component)
promoter (lambda cI regulated)

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Amp Cas
BBa_I13800 Version 1 (Component)
Ampicillin Resistance Cassette

P(Lac) IQ
BBa_I14032 Version 1 (Component)
promoter P(Lac) IQ

LasR+PAI
BBa_R0079 Version 1 (Component)
Promoter (LasR & PAI regulated)

lasr
BBa_C0079 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(+LVA)

BBa_B0016
BBa_B0016 Version 1 (Component)
Terminator (T7 RNAP specific, T_Phi)

lasI
BBa_C0078 Version 1 (Component)
autoinducer synthetase for PAI from Pseudomonas aeruginosa

lasR
BBa_C0179 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(no LVA)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1157008
BBa_K1157008 Version 1 (Component)
Las specific quorum sensing sensor

Las CIO
BBa_I14016 Version 1 (Component)
P(Las) CIO

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

BBa_K314103
BBa_K314103 Version 1 (Component)
Lac induced expression cassette

lasI
BBa_C0178 Version 1 (Component)
autoinducer synthetase for PAI from Pseudomonas aeruginosa (no LVA)

BBa_K864400
BBa_K864400 Version 1 (Component)
Ptac, trp & lac regulated promoter

BBa_J33207
BBa_J33207 Version 1 (Component)
lac promoter and lacZ

BBa_K1499500
BBa_K1499500 Version 1 (Component)
quorum sensing machinery that activates GFP expression

BBa_K748002
BBa_K748002 Version 1 (Component)
Truncated lysostaphin coding sequence. Lysostaphin has has a specific lytic action against S.aureus.

BBa_F1610
BBa_F1610 Version 1 (Component)
3OC₆HSL Sender Device

las TetO
BBa_I14015 Version 1 (Component)
P(Las) TetO

BBa_M39016
BBa_M39016 Version 1 (Component)
Quorum Sensing Device

BBa_K734004
BBa_K734004 Version 1 (Component)
sfGFP regulated by LasR quorum sensing pathway

BBa_K734003
BBa_K734003 Version 1 (Component)
CRE regulated by LasR quorum sensing pathway

BBa_K726007
BBa_K726007 Version 1 (Component)
T7 driven lac operated inducer for the las quorum-sensing system

pLas + RBS
BBa_K1073003 Version 1 (Component)
Inducible promoter of the las quorum sensing system with RBS

BBa_S03119
BBa_S03119 Version 1 (Component)
--Specify Parts List--

YF1
BBa_K592004 Version 1 (Component)
YF1 blue-light sensor protein

BBa_K1893000
BBa_K1893000 Version 1 (Component)
Las receiver (LasR+pLas)

BBa_J329004
BBa_J329004 Version 1 (Component)
Quorum Sensing Sender Part for Use in BBa_J329003

RIP
BBa_K237000 Version 1 (Component)
RIP - Quorum sensing inhibitor of Staphylococcus spp. (Including MRSA)

BBa_K359005
BBa_K359005 Version 1 (Component)
Senses AIP and has RFP reporter (from Agr quorum sensing system)

pPQS
BBa_K1157000 Version 1 (Component)
promoter sequence for PQS quorum sensing

BBa_K359002
BBa_K359002 Version 1 (Component)
Agr quroum sensing sensor/generator, FepA pore, with P2 + reporter

Las sensor
BBa_K1157016 Version 1 (Component)
Pc-LasR-pLas-BFP

BBa_K843007
BBa_K843007 Version 1 (Component)
Cell Limiter using quorum sensing

BBa_J40000
BBa_J40000 Version 1 (Component)
Quorum sensing promoter with lac I and CFP

BBa_K592016
BBa_K592016 Version 1 (Component)
B0034-YF1-B0034-FixJ, blue light sensor and RR with RBS

BBa_K1157009
BBa_K1157009 Version 1 (Component)
Quorum sensing receptor pqsR generator