BBa_K187015BBa_K187015 Version 1 (Component)Chloramphenicol resistance in pAB, Biobytes plasmid
BBa_K187022BBa_K187022 Version 1 (Component)Ampicillin resistance in pBA, Biobytes plasmid
MLSBBa_K1119000 Version 1 (Component)Mitochondrial Leader Sequence in RFC10 standard
BBa_K1866010BBa_K1866010 Version 1 (Component)Promoter+RibosomeBindingSite+NosZ+SuperYellowFluorescenceProtein (in pSB1C3)
BBa_K812233BBa_K812233 Version 1 (Component)sfGFP in pCS2+ with elastase promoter
BBa_K1866002BBa_K1866002 Version 1 (Component)Promoter+RibosomeBindingSite+NrfA+SYFP (in pSB1K3)
BBa_K1484005BBa_K1484005 Version 1 (Component)AmilCP chromoprotein in BBa and MoClo standard
BBa_J72078BBa_J72078 Version 1 (Component){double terminator}, b0015 in BglBrick format
BBa_K187021BBa_K187021 Version 1 (Component)Kanamycin resistance gene in pBA, BioBytes plasmid
BBa_K1616003BBa_K1616003 Version 1 (Component)VVD link to YC155 (YFP Cter split)
BBa_K1616004BBa_K1616004 Version 1 (Component)VVD linked to YN155 (YFP Nter split)
BBa_I733005BBa_I733005 Version 1 (Component)Produce GFP in presence of AHL
BBa_S03736BBa_S03736 Version 1 (Component)pLac-lox-RBS-Tet (in pSB1A2)
BBa_J04795BBa_J04795 Version 1 (Component)Riboswitch designed to turn "ON" a protein
BBa_K1510105BBa_K1510105 Version 1 (Component)sRNA targets histidine kinase 11 mRNA in S.mutans
BBa_K936012BBa_K936012 Version 1 (Component)Leader sequence that brings protein to periplasm
BBa_K187005BBa_K187005 Version 1 (Component)Sigma 70 25% promoter in pAB, BioBytes plasmid
BBa_K187007BBa_K187007 Version 1 (Component)Sigma 70 75% promoter in pAB, Biobytes plasmid
BBa_K187014BBa_K187014 Version 1 (Component)Sigma 70 100% promoter in pBA, Biobytes plasimd
BBa_K187006BBa_K187006 Version 1 (Component)Sigma 70 50% promoter in pAB, Biobytes plasmid
BBa_K187003BBa_K187003 Version 1 (Component)Sigma 70 1% promoter in pAB BioBytes plasmid
BBa_K187004BBa_K187004 Version 1 (Component)Sigma 70 10% promoter in pAB, Biobytes plasmid
BBa_K812133BBa_K812133 Version 1 (Component)sfGFP with kozak sequence for expression in Xenopus
BBa_K730002BBa_K730002 Version 1 (Component)The complete denitrification of nitrate by bacteria to dinitrogen (N,)
BBa_I758600BBa_I758600 Version 1 (Component)Screen for binding affinity of mutant cI lambda to promotor sites
BBa_K1154006BBa_K1154006 Version 1 (Component)Mating pheromone-induced IGPD and constitutive LDH expression in yeast
BBa_K1657006BBa_K1657006 Version 1 (Component)It is called GAB. It have the resistance to glyphosate and glufosinate
BBa_M11402BBa_M11402 Version 1 (Component)5' UTR and RBS of psbA2 gene in Synechocystis sp. PCC 6803
BBa_K2020051BBa_K2020051 Version 1 (Component)wild type tyrosyl synthetase for use in E.coli with amber anticodon and Y32G
BBa_K1961007BBa_K1961007 Version 1 (Component)CYP1A2, an enzyme of cytochrome P450 protein family that metabolizes toxin in liver
BBa_K1113411BBa_K1113411 Version 1 (Component)Targeting sequence for the delivery of the LacZ gene to the Carboxysome
BBa_K2123114BBa_K2123114 Version 1 (Component)Stationary phase promoter in tandem (3 repetition) with downstream mer operator + RFP (K081014)
BBa_K1412088BBa_K1412088 Version 1 (Component)A combination of theophylline aptamer and taRNA that can response theophylline to regulate circuit
PrtDEFBBa_K258007 Version 1 (Component)Export of recombinant proteins in Escherichia coli using ABC transporter of Erwinia chrysanthemi
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K2123116BBa_K2123116 Version 1 (Component)Universal promoter for both phase of growth in tandem with downstram mer operator + RFP (K081014)
BBa_K541715BBa_K541715 Version 1 (Component)Multi-host vector pTG262 converted to BioBrick vector wtih LALF protein and SacB signal peptide
Intein_assisted_Bisection_MappingIntein_assisted_Bisection_Mapping_collection Version 1 (Collection)Split inteins are powerful tools for seamless ligation of synthetic split proteins. Yet, their use remains limited because the already intricate split site identification problem is often complicated by the requirement of extein junction sequences. To address this, we augmented a mini-Mu transposon-based screening approach and devised the intein-assisted bisection mapping (IBM) method. IBM robustly revealed clusters of split sites on five proteins, converting them into AND or NAND logic gates. We further showed that the use of inteins expands functional sequence space for splitting a protein. We also demonstrated the utility of our approach over rational inference of split sites from secondary structure alignment of homologous proteins. Furthermore, the intein inserted at an identified site could be engineered by the transposon again to become partially chemically inducible, and to some extent enabled post-translational tuning on host protein function. Our work offers a generalizable and systematic route towards creating split protein-intein fusions and conditional inteins for protein activity control.
SEGASEGA_collection Version 1 (Collection)In the Standardized Genome Architecture (SEGA), genomic integration of DNA fragments is enabled by λ-Red recombineering and so-called landing pads that are a common concept in synthetic biology and typically contain features that i) enable insertion of additional genetic elements and ii) provide well-characterized functional parts such as promoters and genes, and iii) provides insulation against genome context-dependent effects. The SEGA landing pads allow for reusable homology regions and time-efficient construction of parallel genetic designs with a minimal number of reagents and handling steps. SEGA bricks, typically synthetic DNA or PCR fragments, are integrated on the genome simply by combining the two reagents (i.e. competent cells and DNA), followed by incubation steps, and successful recombinants are identified by visual inspection on agar plates. The design of the SEGA standard was heavily influenced by the Standard European Vector Architecture (SEVA). SEGA landing pads typically hosts two major genetic “control elements” that influence gene expression on the transcriptional (C1), and translational (C2) level. Furthermore, landing pads contain gadgets such as selection and counterselection markers.