Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K1896006BBa_K1896006 Version 1 (Component)mGFPuv2 (N-part)
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
BBa_K209402BBa_K209402 Version 1 (Component)AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]
BBa_K1896007BBa_K1896007 Version 1 (Component)mGFPuv2 (C-part)
NpuDnaE(N)BBa_K1362400 Version 1 (Component)NpuDnaE N-Intein cloning piece
BBa_K249008BBa_K249008 Version 1 (Component)YFP with N-terminal Arganine Tag
BBa_K1159995BBa_K1159995 Version 1 (Component)10/25 N-Part Assembly Scar
BBa_K209400BBa_K209400 Version 1 (Component)AarI B-C part, hM4D
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
RFC105 ABBa_K1362414 Version 1 (Component)N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A
BBa_K1423000BBa_K1423000 Version 1 (Component)BCLA N-terminal Domain
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
BBa_S03119BBa_S03119 Version 1 (Component)--Specify Parts List--
BBa_I759001BBa_I759001 Version 1 (Component)pTet-spacer-N
BBa_K209415BBa_K209415 Version 1 (Component)AarI B-C part, hM2D
BBa_K737017BBa_K737017 Version 1 (Component)This part conteins gvpC-20psi protein
BBa_J70042BBa_J70042 Version 1 (Component)6his part for use with BioScaffold parts ATG-6his-GGATCC (glycine serine)
1NpuE(N*)BBa_K1362102 Version 1 (Component)RBS + NpuDnaE N-intein RFC[105] non-splicing control construct (with His6)
BBa_K1896010BBa_K1896010 Version 1 (Component)mGFPuv2 generator
RFC105 NNBBa_K1362415 Version 1 (Component)N-terminal splicing overhang TGCT=Cys+1/3 Leu|Ile RFC[105] overhang NN
R0011-NBBa_K1725080 Version 1 (Component)Promoter (lacI regulated, lambda pL hybrid) with extra Nhe I site
BBa_K209008BBa_K209008 Version 1 (Component)Aar1 C-D part, PI3k1 (-N) (Dictystelium dicoideum)
N-carrierBBa_K1362053 Version 1 (Component)Carrier for RFC[105] N-terminal inserts
BBa_K315007BBa_K315007 Version 1 (Component)Lox N forward
lacZ aBBa_E0033 Version 1 (Component)LacZ alpha fragment; complements matching N-terminal deletion mutant (lacZ-omega)
BBa_T1001BBa_T1001 Version 1 (Component)Kill this part
TerDnaE3(NBBa_K1362130 Version 1 (Component)RBS + TerDnaE3 N-intein RFC[105] assembly construct (with His6)
SspDnaB(N*BBa_K1362142 Version 1 (Component)RBS + SspDnaB N-intein RFC[105] non-splicing control construct (with His6)
SspDnaB(N)BBa_K1362140 Version 1 (Component)RBS + SspDnaB N-intein RFC[105] assembly construct (with His6)
SspDnaX(N)BBa_K1362110 Version 1 (Component)RBS + SspDnaX N-intein RFC[105] assembly construct (with His6)
SspGyrB(N)BBa_K1362120 Version 1 (Component)RBS + SspGyrB N-intein RFC[105] assembly construct (with His6)
BBa_K1896015BBa_K1896015 Version 1 (Component)mGFPuv2-mSA2 generator
BBa_K1896016BBa_K1896016 Version 1 (Component)INP_RC-mGFPuv2 generator
BBa_K1896014BBa_K1896014 Version 1 (Component)mGFPuv2-streptavidin generator
His-ScaffoBBa_K1602027 Version 1 (Component)Protein scaffold with N-terminal HisTag
BBa_K209401BBa_K209401 Version 1 (Component)AarI B-C part, Rs1.3
BBa_K1159006BBa_K1159006 Version 1 (Component)Secretory NanoLuc Luciferase (IgKappa-SigP_nLuc) in RFC[25] N-Part
NAGABBa_K1483000 Version 1 (Component)α-N-Acetylgalactosamindase
Dsb-Art175BBa_K1659002 Version 1 (Component)Artilysin Art-175 fused at N-terminal with DsbA signal peptide