Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_M31000
BBa_M31000 Version 1 (Component)
refactoring the M13 genome

BBa_M31975
BBa_M31975 Version 1 (Component)
M13 refactoring

BBa_M30110
BBa_M30110 Version 1 (Component)
part of the M13 viral genome for annotation/refactoring

BBa_K1445000
BBa_K1445000 Version 1 (Component)
M13 Ori: Packaging signal for M13 phage

BBa_M30050
BBa_M30050 Version 1 (Component)
Refactoring of M13K07 genome

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K1333005
BBa_K1333005 Version 1 (Component)
M13 bacteriophage g8p with a FLAG tag on C-terminal

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

BBa_K1333312
BBa_K1333312 Version 1 (Component)
I13458-I13453-RBS-G3P(M13)

BBa_M31111
BBa_M31111 Version 1 (Component)
20.109 refactoring.

BBa_M31114
BBa_M31114 Version 1 (Component)
M13, gene II from HpaI to the end [1-831bp]

M13 genes
BBa_K1139019 Version 1 (Component)
Promoterless-M13 on pSB3

M13-R(-26)
BBa_G00104 Version 1 (Component)
M13-R (-26)

M13-F(-20)
BBa_G00103 Version 1 (Component)
M13-F (-20)

BBa_M31513
BBa_M31513 Version 1 (Component)
Refactored portion of M13 genome from unique Hpal site on gene II to the BamHI site on gene III

BBa_M31516
BBa_M31516 Version 1 (Component)
Refactored portion of M13 genome from unique Hpal site on gene II to the BamHI site on gene III

BBa_K1039018
BBa_K1039018 Version 1 (Component)
pVIII of M13 Bacteriophage

M13-R(-46)
BBa_G00107 Version 1 (Component)
M13-R (-46)

M13-F(-40)
BBa_G00105 Version 1 (Component)
M13-F (-40)

M13-F(-46)
BBa_G00106 Version 1 (Component)
M13-F (-46)

BBa_M31001
BBa_M31001 Version 1 (Component)
Refactoring of Gene 2 to remove gene 10

BBa_M30060
BBa_M30060 Version 1 (Component)
Refactoring M13K07

BBa_M30059
BBa_M30059 Version 1 (Component)
Refactoring M13K07

BBa_K1139022
BBa_K1139022 Version 1 (Component)
Promoterless-M13-Plac-GFP on pSB3

BBa_K1333002
BBa_K1333002 Version 1 (Component)
M13 bacteriophage g3p with start codon of "ATG" and a FLAG tag on C-terminal

ThiE
BBa_K558009 Version 1 (Component)
Thiamin monophosphate pyrophosphorylase

P3
BBa_K1781000 Version 1 (Component)
P3 from M13

M13-Plac
BBa_K1139018 Version 1 (Component)
Promoterless-M13 + Plac on pSB3

BBa_M31999
BBa_M31999 Version 1 (Component)
Refactoring between HpaI and BamHI sites

CHE
BBa_K256023 Version 1 (Component)
Cholesteryl Esterase (CHE)

BBa_K1333004
BBa_K1333004 Version 1 (Component)
M13 bacteriophage g5p with a FLAG tag on C-terminal

BBa_M31116
BBa_M31116 Version 1 (Component)
M13 Gene VIII terminator and promoter of Gene X

BBa_K1333320
BBa_K1333320 Version 1 (Component)
FourU-PIII(M13)