ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
ATGATG Version 1 (Component) Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
TnrABO_11240 Version 1 (Component) Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_J04031BBa_J04031 Version 1 (Component)GFP w/LVA tag
BBa_K567013BBa_K567013 Version 1 (Component)tRNA(Asp)-TAG
HABBa_I712008 Version 1 (Component)HA affinity tag
NLSBBa_J176008 Version 1 (Component)NLS
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
PESTBBa_J176018 Version 1 (Component)PEST
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
NLSmycSTOPBBa_J176031 Version 1 (Component)NLS myc stop
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
BBa_K115002BBa_K115002 Version 1 (Component)RNA thermometer (FourU)
BBa_K115001BBa_K115001 Version 1 (Component)RNA thermometer (ROSE)
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
BBa_I2032BBa_I2032 Version 1 (Component)T7 RNA polymerase
BBa_K416003BBa_K416003 Version 1 (Component)Yeast Secretion Tag
RBS-GFP-TeBBa_I763020 Version 1 (Component)RBS-GFP (+LVA Tag)-Terminators
BBa_J70042BBa_J70042 Version 1 (Component)6his part for use with BioScaffold parts ATG-6his-GGATCC (glycine serine)
polyABBa_J176009 Version 1 (Component)polyA2
BBa_J70044BBa_J70044 Version 1 (Component)6his part for use with BioScaffold parts (G)GATCC(glycine serine)-6his-TAA
His6BBa_K1362431 Version 1 (Component)N-terminal His6 (C-Intein)
BBa_J04051BBa_J04051 Version 1 (Component)RFP with tag
T7BBa_K145014 Version 1 (Component)T7 RNA Polymerase with UmuD derived tag
aspABBa_C0083 Version 1 (Component)aspartate ammonia-lyase
BBa_K208003BBa_K208003 Version 1 (Component)OmpA Signal Peptide - Silver Fusion Compatible
BBa_J70048BBa_J70048 Version 1 (Component)6his part for use with BioScaffold parts ATG-GGATCC (glycine serine)-6 His-TAA
ssrA(DAS+4BBa_K1075020 Version 1 (Component)E. coli ssrA(DAS+4)
BBa_K1149022BBa_K1149022 Version 1 (Component)pelB (E.coli optimized)
HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
BBa_K208005BBa_K208005 Version 1 (Component)TorA Signal Peptide - Silver Fusion Compatible
LAABBa_M0050 Version 1 (Component)AANDENYALAA. (Very fast) SsrA degradation tag.
BBa_M0051BBa_M0051 Version 1 (Component)AANDENYNYADAS. (Fast) SsrA degradation tag.
Y taRNABBa_K606034 Version 1 (Component)Tyrosine amber supressor tRNA
BBa_K496003BBa_K496003 Version 1 (Component)RBS + SlrP secretion tag, salmonella T3 sec. sys.
BBa_K199045BBa_K199045 Version 1 (Component)CUACC tRNA Suppressor (Produces Serine)
BBa_K249008BBa_K249008 Version 1 (Component)YFP with N-terminal Arganine Tag