SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_I15008BBa_I15008 Version 1 (Component)heme oxygenase (ho1) from Synechocystis
BBa_K515000BBa_K515000 Version 1 (Component)IaaM - tryptophan-2-mono-oxygenase
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
EFEBBa_K1065000 Version 1 (Component)<html>2-oxoglutarate oxygenase/decarboxylase (EFE)</html>
BBa_K902023BBa_K902023 Version 1 (Component)Moco Riboswitch
BBa_K1598001BBa_K1598001 Version 1 (Component)TPH1 (Tryptophan hydroxylase 1)
BBa_K1999001BBa_K1999001 Version 1 (Component)Mono(2-hydroxyethyl) terephthalate hydrolase (MHETase)
SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_K1688001BBa_K1688001 Version 1 (Component)Mono-rhamnolipid genes
BBa_K192099BBa_K192099 Version 1 (Component)catechol 1 2-dioxygenase
BBa_K357000BBa_K357000 Version 1 (Component)catechol 1 2-dioxygenase
BBa_K192100BBa_K192100 Version 1 (Component)catechol 1 2-dioxygenase
BBa_J119123BBa_J119123 Version 1 (Component)Promoter-tryptophan, Ptrp, repressible promoter of the tryptophan operon
BBa_K316003BBa_K316003 Version 1 (Component)XylE - catechol 2,3-dioxygenase from P.putida with terminator
TrpZipper2BBa_K792006 Version 1 (Component)Tryptophan rich peptide (TrpZipper2)
PolyWbBBa_K792008 Version 1 (Component)Tryptophan rich peptide (PolyWb)
BBa_K953000BBa_K953000 Version 1 (Component)Heme Oxygenase with T7 & RBS (E. coli Codon Optimised)
BBa_K117002BBa_K117002 Version 1 (Component)LsrA promoter (indirectly activated by AI-2)
BBa_K1763442BBa_K1763442 Version 1 (Component)MaSp1/2[1:2]-12(1C3)
BBa_K1763438BBa_K1763438 Version 1 (Component)MaSp1/2[2:1]-12(1C3)
CDOBBa_K2004007 Version 1 (Component)Cysteine dioxygenase (CDO)
BBa_K515001BBa_K515001 Version 1 (Component)IaaH - Indoleacetamide hydrolyase
YonOBO_2255 Version 1 (Component) BBa_K812020BBa_K812020 Version 1 (Component)Eukaryotic PoPs -> IaaH. Indoleacetamide hydrolyase for Auxin generator, with kozak
yonOBO_30035 Version 1 (Component) EFE generaBBa_K1065001 Version 1 (Component)AraC-pBAD + 2-oxoglutarate oxygenase/decarboxylase (EFE) + terminators
BBa_K1025005BBa_K1025005 Version 1 (Component)Tryptophan-sensor Part
BBa_K079019BBa_K079019 Version 1 (Component)Lac 2 - operator library member
BBa_K1763439BBa_K1763439 Version 1 (Component)MaSp1/2[2:1]-12(T7)
BBa_K1763443BBa_K1763443 Version 1 (Component)MaSp1/2[1:2]-12(T7)
Lin-2BO_9115 Version 1 (Component) BBa_K902086BBa_K902086 Version 1 (Component)r0040-moco-moco-s7-j04500
"Eye 2"BBa_K1080011 Version 1 (Component)ChlI2
2/3GlyBBa_K1362467 Version 1 (Component)other 2/3Gly
BBa_K1688000BBa_K1688000 Version 1 (Component)Mono-rhamnolipid gene (inc RBS, J23101 promoter)
BBa_K1448008BBa_K1448008 Version 1 (Component)In E coli mono-terpene production cassette
BBa_K500001BBa_K500001 Version 1 (Component)lignin degradation 2