Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_K1560003BBa_K1560003 Version 1 (Component)Knock-In Knock-Out Vector for HVO_1373
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K1560004BBa_K1560004 Version 1 (Component)Knock-In Knock-Out Vector for HVO_1140
BBa_K1560002BBa_K1560002 Version 1 (Component)Knock-In Knock-Out Vector for HVO_1199
FurBO_11498 Version 1 (Component) BBa_K1560001BBa_K1560001 Version 1 (Component)pSCKiKo Knock-In Knock-Out Vector Backbone
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_P10598BBa_P10598 Version 1 (Component)GoldenBraid destination vector omega insert
BBa_P10599BBa_P10599 Version 1 (Component)GoldenBraid destination vector alpha insert
BBa_K1321338BBa_K1321338 Version 1 (Component)T7 Expression vector
BBa_K1085050BBa_K1085050 Version 1 (Component)<i>des</i> knock out
BBa_K2184000BBa_K2184000 Version 1 (Component)Classical Cas9 endonuclease for knock-out of target genes
BBa_K2082251BBa_K2082251 Version 1 (Component)Sequence for rpoZ Knock-Out in E. coli through CRISPR/Cas9
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
BBa_J61002BBa_J61002 Version 1 (Component)EX-Ptet-S-rbsRFP-P "RFP reporter"
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
BBa_K1465225BBa_K1465225 Version 1 (Component)Knock-down of phosphofructokinase A using sRNA (sRNA:pfkA)
BBa_I714035BBa_I714035 Version 1 (Component)F+ K-12 E.Coli cells with F-traI knock out(Kan+)
BBa_K209399BBa_K209399 Version 1 (Component)AarI A-D acceptor vector
BBa_K309020BBa_K309020 Version 1 (Component)eCFP (for use in C. elegans chassis)
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants
BBa_K863204BBa_K863204 Version 1 (Component)shuttle vector pECPP11JS for recombination of genes of interest in yeast
BBa_K309012BBa_K309012 Version 1 (Component)Unc-54 3' UTR (for use in C. elegans chassis)
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
scarBBa_G0000 Version 1 (Component)SpeI/XbaI scar for RBS-CDS junctions
BsaI ->BBa_K1362425 Version 1 (Component)BsaI restriction site for RFC[???] cloning (in part in prefix)
BBa_J70029BBa_J70029 Version 1 (Component)RBS + mCherry gene, optimized for expression in Me. florum and E. coli
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard