SynBioHub

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Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Public

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Public

BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB

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BBa_B0015
BBa_B0015 Version 1 (Component)
double terminator (B0010-B0012)

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p(tetR)
BBa_R0040 Version 1 (Component)
TetR repressible promoter

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LacI
BBa_R0010 Version 1 (Component)
promoter (lacI regulated)

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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lacI+pL
BBa_R0011 Version 1 (Component)
Promoter (lacI regulated, lambda pL hybrid)

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BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

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BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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BBa_B0014
BBa_B0014 Version 1 (Component)
double terminator (B0012-B0011)

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BBa_B0010_sequence
BBa_B0010_sequence Version 1 (Sequence)

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BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

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lacI
BBa_Q04121 Version 1 (Component)
QPI (B0034.C0012.B0015.R0011)

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BBa_J61101
BBa_J61101 Version 1 (Component)
Ribosome Binding Site Family Member

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BBa_B0034_sequence
BBa_B0034_sequence Version 1 (Sequence)

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tetR
BBa_Q04400 Version 1 (Component)
QPI (B0034.C0040.B0015.R0040)

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BBa_R0040_sequence
BBa_R0040_sequence Version 1 (Sequence)

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AraC
BBa_R0080 Version 1 (Component)
Promoter (AraC regulated)

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BBa_R0010_sequence
BBa_R0010_sequence Version 1 (Sequence)

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BBa_J61120
BBa_J61120 Version 1 (Component)
Ribosome Binding Site Family Member

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BBa_B0017
BBa_B0017 Version 1 (Component)
double terminator (B0010-B0010)

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BBa_Q01121
BBa_Q01121 Version 1 (Component)
QPI (B0031.C0012.B0015.R0011)

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SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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BBa_J70607
BBa_J70607 Version 1 (Component)
R0010 + B0034 (-BsaXI site in R0010)

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cI HK022
BBa_R0050 Version 1 (Component)
Promoter (HK022 cI regulated)

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BBa_J15001
BBa_J15001 Version 1 (Component)
strong synthetic E. coli ribosome binding site with SacI site.

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hixC
BBa_J44000 Version 1 (Component)
hixC binding site for Salmonella typhimurium Hin recombinase

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BBa_J61100
BBa_J61100 Version 1 (Component)
Ribosome Binding Site Family Member

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BBa_J85600
BBa_J85600 Version 1 (Component)
attB1 recombination site

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BBa_J06801
BBa_J06801 Version 1 (Component)
QPI (B0034.J06501.B0015.R0011)

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BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

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BBa_K1795002
BBa_K1795002 Version 1 (Component)
R0010 gRNA under R0040

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BBa_I7101
BBa_I7101 Version 1 (Component)
R0040.B0032.E0040.B0015

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BBa_Q04510
BBa_Q04510 Version 1 (Component)
QPI (B0034.C0051.B0015.R0051)

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BBa_B0035
BBa_B0035 Version 1 (Component)
RBS (B0030 derivative)

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BBa_K2066527
BBa_K2066527 Version 1 (Component)
B0034 with scar TACTAG

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EYFP
BBa_E0034 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

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BBa_J85202
BBa_J85202 Version 1 (Component)
R0040.B0034.E0040

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BBa_J70587
BBa_J70587 Version 1 (Component)
{15,18;13,10} BsaXI BioScaffold (R0040-B0034-E1010-B0010-B0012)

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BBa_K781001
BBa_K781001 Version 1 (Component)
[R0010][B0034] - RFP-FliC Insertion Chimera

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BBa_J70588
BBa_J70588 Version 1 (Component)
{15,18;13,10} BsaXI BioScaffold (reverse R0040-B0034-E1010-B0010-B0012)

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BBa_S05055
BBa_S05055 Version 1 (Component)
R0010:P0451

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BBa_B0024
BBa_B0024 Version 1 (Component)
double terminator (B0012-B0011), reversed

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BBa_I714044
BBa_I714044 Version 1 (Component)
[R0010][I714031]

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BBa_E5503
BBa_E5503 Version 1 (Component)
R0040.B0030.E0040

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BBa_E5504
BBa_E5504 Version 1 (Component)
R0040.B0032.E0040

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