Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

pSB1C3
pSB1C3 Version 1 (Component)
High copy BioBrick assembly plasmid

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

pSB1AT3
pSB1AT3 Version 1 (Component)
High copy BioBrick assembly plasmid

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

pSB1A2
pSB1A2 Version 1 (Component)
pSB1A2 (Replaced by pSB1A3)

BBa_K1321338
BBa_K1321338 Version 1 (Component)
T7 Expression vector

pSB1AK3
pSB1AK3 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_K626000
BBa_K626000 Version 1 (Component)
TRE-Bax-PolyA in PSB1A3 (expression vector)

BBa_K314103
BBa_K314103 Version 1 (Component)
Lac induced expression cassette

pSB1A3
pSB1A3 Version 1 (Component)
High copy BioBrick assembly plasmid

pSB4A3
pSB4A3 Version 1 (Component)
pSB4A3 (Replaced by pSB4A5)

pSB1K3
pSB1K3 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_P10598
BBa_P10598 Version 1 (Component)
GoldenBraid destination vector omega insert

BBa_P10599
BBa_P10599 Version 1 (Component)
GoldenBraid destination vector alpha insert

pSB1A1
pSB1A1 Version 1 (Component)
pUC19 with a BioBrick cloning site (Replaced by pSB1A3)

Screening
pSB1A10 Version 1 (Component)
Screening Plasmid v1.0

pSB1AC3
pSB1AC3 Version 1 (Component)
High copy BioBrick assembly plasmid

pSB1A7
pSB1A7 Version 1 (Component)
Transcriptionally insulated high copy BioBrick plasmid

pSB1T3
pSB1T3 Version 1 (Component)
High copy BioBrick assembly plasmid

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

pSB3K3
pSB3K3 Version 1 (Component)
Low to medium copy BioBrick standard vector

BBa_K364332
BBa_K364332 Version 1 (Component)
TRE-Gal4-PXR-PolyA in PSB1A3 (expression vector)

BBa_K364333
BBa_K364333 Version 1 (Component)
TRE-Gal4-EcR-PolyA in PSB1A3 (expression vector)

pSB2K3
pSB2K3 Version 1 (Component)
Inducible copy number BioBrick plasmid

pSB1AK8
pSB1AK8 Version 1 (Component)
Eukaryotic terminator vector (formerly BBa_J52017)

pSB4A1
pSB4A1 Version 1 (Component)
pSB4A1 (Replaced by pSB4A5)

BBa_J61002
BBa_J61002 Version 1 (Component)
EX-Ptet-S-rbsRFP-P "RFP reporter"

pSB6A1
pSB6A1 Version 1 (Component)
pBR322 converted to BioBrick vector (formally BBa_I739201)

pSB1AC0
pSB1AC0 Version 1 (Component)
pSB1AC0

pSB1C4
pSB1C4 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_K364331
BBa_K364331 Version 1 (Component)
TRE-PolyA in pBSB1A3

pSB4A5
pSB4A5 Version 1 (Component)
Low copy BioBrick standard vector

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

BBa_K1321002
BBa_K1321002 Version 1 (Component)
Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25