Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pBad/araCBBa_I0500 Version 1 (Component)Inducible pBad/araC promoter
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
AraCBBa_R0080 Version 1 (Component)Promoter (AraC regulated)
AraBBa_K808000 Version 1 (Component)araC-Pbad - Arabinose inducible regulatory promoter/repressor unit
BBa_I13507BBa_I13507 Version 1 (Component)Screening plasmid intermediate
BBa_J42043BBa_J42043 Version 1 (Component)araB complete recomb. plasmid
AraCBO_10845 Version 1 (Component) BBa_I13504BBa_I13504 Version 1 (Component)Screening plasmid intermediate
BBa_K228009BBa_K228009 Version 1 (Component)AraC protein(reversed sequence) and Pbad promoter
BBa_J42042BBa_J42042 Version 1 (Component)araB FB recomb. plasmid
BBa_J42041BBa_J42041 Version 1 (Component)araB F recomb. plasmid
BBa_K510000BBa_K510000 Version 1 (Component)pUC18Sfi-miniTn7BB-Gm
AraC O2BBa_R0081 Version 1 (Component)Inhibitor (AraC loop attachment with O2 site)
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
araCBBa_K1088005 Version 1 (Component)arabinose regulator (araC) coding sequence
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_J61002BBa_J61002 Version 1 (Component)EX-Ptet-S-rbsRFP-P "RFP reporter"
BBa_K607040BBa_K607040 Version 1 (Component)reverse pBad/araC promoter
BBa_J42047BBa_J42047 Version 1 (Component)malQ F recomb. plasmid
BBa_J42051BBa_J42051 Version 1 (Component)fucK FB recomb. plasmid
BBa_J42045BBa_J42045 Version 1 (Component)malP FB recomb. plasmid
BBa_J42048BBa_J42048 Version 1 (Component)malQ FB recomb. plasmid
BBa_J42050BBa_J42050 Version 1 (Component)fucK F recomb. plasmid
BBa_J42044BBa_J42044 Version 1 (Component)malP F recomb. plasmid
BBa_J42040BBa_J42040 Version 1 (Component)recomb. backbone
AraCBBa_I12205 Version 1 (Component)AraC
AraBBO_26588 Version 1 (Component) araBBO_29034 Version 1 (Component) BBa_K731201BBa_K731201 Version 1 (Component)Arabinose inducible araC-pBAD promoter
Rubber FucBBa_K1088024 Version 1 (Component)HRT2 prenyltransferase from Hevea Brasilianis (ara promoter without araC: arabinose inducible)
Cre recombBBa_K313008 Version 1 (Component)pT7 - Cre recombinase generator
BBa_I718008BBa_I718008 Version 1 (Component)araC-pBad-rbs-cre
BBa_K228012BBa_K228012 Version 1 (Component)AraC-Pbad-SupD
araC-CysEmBBa_K731030 Version 1 (Component)Inducible araC-pBAD promoter regulating M256I CysE
BBa_I13500BBa_I13500 Version 1 (Component)Screening plasmid intermediate
mRFP1BBa_I13502 Version 1 (Component)Screening plasmid intermediate
BBa_K510012BBa_K510012 Version 1 (Component)pUC18R6KT-miniTn7BB-Gm