Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K540003BBa_K540003 Version 1 (Component)rcn-OmpR234, device that triggers adherence in response to cobalt.
BBa_K540001BBa_K540001 Version 1 (Component)rcn, cobalt-sensitive promoter
BBa_K540000BBa_K540000 Version 1 (Component)<i>rcn-csgBAEFG</i>, over-induces adherence in response to cobalt
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_J09855BBa_J09855 Version 1 (Component)Constitutive luxR device with pLuxR
BBa_K216005BBa_K216005 Version 1 (Component)PyeaR promoter, responsive to nitrate, nitrite and nitric oxide
BBa_F1610BBa_F1610 Version 1 (Component)3OC<sub>6</sub>HSL Sender Device
BBa_F2622BBa_F2622 Version 1 (Component)3OC<sub>6</sub>HSL Receiver Device
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
BBa_K342003BBa_K342003 Version 1 (Component)OmpR234 protein, with higher effect on Curli promoter
BBa_I763026BBa_I763026 Version 1 (Component)LacI coding device regulated by pTetR
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_F2621BBa_F2621 Version 1 (Component)3OC<sub>6</sub>HSL Receiver Device
BBa_K346002BBa_K346002 Version 1 (Component)PmerT promoter (mercury-responsive)
BBa_K549038BBa_K549038 Version 1 (Component)Promotor prcnA of rcnA with RcnR-binding site and 50nt rcnA
RFC 37BBa_K245127 Version 1 (Component)GCN
FixJBBa_K592005 Version 1 (Component)FixJ, the response regulator to YF1
sacBBBa_K322921 Version 1 (Component)B. subtilis levansucrase. Lethal to E. coli in presence of sucrose.
BBa_K112808BBa_K112808 Version 1 (Component)Enterobacteria phage T4 Lysis Device - no promoter
BBa_I0460BBa_I0460 Version 1 (Component)aiiA Device (B0034.C0060.B0015)
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K1404002BBa_K1404002 Version 1 (Component)Ptac-NiCoTB, improves nickel and cobalt internalization
BBa_K1962016BBa_K1962016 Version 1 (Component)A device for expression of Im-E3 in response to pH
BBa_K1962015BBa_K1962015 Version 1 (Component)A device for expression of Im-Ia in response to pH
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_K119002BBa_K119002 Version 1 (Component)RcnR operator (represses RcnA)
BBa_K1321342BBa_K1321342 Version 1 (Component)sfGFP fused to CBDcex in RFC 25
BBa_K1962012BBa_K1962012 Version 1 (Component)A device for expression of Im-E3 in response to bile salts