Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_K1994021
BBa_K1994021 Version 1 (Component)
sgRNA containing two golden gate adapters

Adapter
BBa_I732007 Version 1 (Component)
BglII + BamHI

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K1994005
BBa_K1994005 Version 1 (Component)
20nt Golden Gate adapter

BBa_K1903018
BBa_K1903018 Version 1 (Component)
Golden Gate Adapter

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1994017
BBa_K1994017 Version 1 (Component)
sgRNA with 5' golden gate adapter and PP7 protein binding site

BBa_K1994015
BBa_K1994015 Version 1 (Component)
sgRNA with 5' golden gate adapter and COM protein binding site

BBa_K1994016
BBa_K1994016 Version 1 (Component)
sgRNA with 5' golden gate adapter and MS2 coat protein binding site

BBa_K1212008
BBa_K1212008 Version 1 (Component)
Golden Gate compatible GFP

BBa_K2116017
BBa_K2116017 Version 1 (Component)
super folder green fluorescent protein

BBa_K1212006
BBa_K1212006 Version 1 (Component)
Golden Gate compatible GFP

BBa_K560016
BBa_K560016 Version 1 (Component)
BsaI Golden Gate Assembly_Backbone

BBa_K1212002
BBa_K1212002 Version 1 (Component)
Golden Gate Compatible pSB3K3

BBa_I766215
BBa_I766215 Version 1 (Component)
Translation Initiation Adaptor

BBa_K812051
BBa_K812051 Version 1 (Component)
Golden brick version of pSB1K3 plasmid for Golden Gate and Golden Brick cloning

BBa_K797013
BBa_K797013 Version 1 (Component)
Plasmid Backbone for golden gate assembly

pSB1C3 GB
BBa_K812050 Version 1 (Component)
Golden brick version of pSB1C3 plasmid for Golden Gate and Golden Brick cloning

BBa_K560013
BBa_K560013 Version 1 (Component)
BsaI Golden Gate Assembly No.2

BBa_K560014
BBa_K560014 Version 1 (Component)
BsaI Golden Gate Assembly No.3

BBa_K560012
BBa_K560012 Version 1 (Component)
BsaI Golden Gate Assembly No.1

BBa_K560015
BBa_K560015 Version 1 (Component)
BsaI Golden Gate Assembly No.4

BBa_J100091
BBa_J100091 Version 1 (Component)
For Testing New Promoters via Golden Gate Assembly

BBa_I732912
BBa_I732912 Version 1 (Component)
Promoter Adapter + LacI

BBa_K1467100
BBa_K1467100 Version 1 (Component)
RFP coding device - Golden Gate Module Flipper

BBa_K1467400
BBa_K1467400 Version 1 (Component)
RFP coding device - Golden Gate Module Flipper

BBa_K1467200
BBa_K1467200 Version 1 (Component)
RFP coding device - Golden Gate Module Flipper

BBa_K1903003
BBa_K1903003 Version 1 (Component)
Golden Gate Adapter

BBa_I766217
BBa_I766217 Version 1 (Component)
Stop-D-BamHI-Adh Terminator Adaptor

BBa_J119127
BBa_J119127 Version 1 (Component)
For Testing New Promoters via Golden Gate Assembly with BsmBI

BBa_J100028
BBa_J100028 Version 1 (Component)
placeholder insert for BsaI Golden Gate Assembly of promoter

BBa_K1467300
BBa_K1467300 Version 1 (Component)
Golden Gate Module Flipper for 3'UTR+Terminator parts

BBa_K797012
BBa_K797012 Version 1 (Component)
Lactose induced GFP and RFP generator asembled by Golden gate assembly

BBa_J119139
BBa_J119139 Version 1 (Component)
Device for Testing New Promoters via Golden Gate Assembly

BBa_J100104
BBa_J100104 Version 1 (Component)
For Testing New Promoters via Golden Gate Assembly v2