Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_K362006BBa_K362006 Version 1 (Component)yaiA shows OxyR-dependent induction of expression by hydrogen peroxide.
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
BBa_K314103BBa_K314103 Version 1 (Component)Lac induced expression cassette
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
BBa_K137076BBa_K137076 Version 1 (Component)AHL inducible production of hydrogen peroxide
BBa_K1321338BBa_K1321338 Version 1 (Component)T7 Expression vector
BBa_K362005BBa_K362005 Version 1 (Component)sufA , this promoter is controlled by OxyR.
BBa_K362001BBa_K362001 Version 1 (Component)ahpC, this promoter is controlled by the OxyR protein.
BBa_K314100BBa_K314100 Version 1 (Component)High constitutive expression cassette
Prm +BBa_I12006 Version 1 (Component)Modified lamdba Prm promoter (repressed by 434 cI)
BBa_K362002BBa_K362002 Version 1 (Component)dps,this promoter is controlled by OxyR protein
NFkBBBa_J52010 Version 1 (Component)NFkappaB-dependent promoter
BBa_K362003BBa_K362003 Version 1 (Component)oxyR,this promoter is controlled by CRP-cAMP
KaiABBa_J36801 Version 1 (Component)KaiA coding region
fhlABBa_K778001 Version 1 (Component)fhlA: a transcriptional activator for enhanced hydrogen production
BBa_K118012BBa_K118012 Version 1 (Component)Synthetic ribosome binding site added by Son of Babel procedure
BBa_K575004BBa_K575004 Version 1 (Component)Continuous expression of LasR receptor protein (with RBS, B0030)
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
BBa_I763026BBa_I763026 Version 1 (Component)LacI coding device regulated by pTetR
BBa_M50011BBa_M50011 Version 1 (Component)This is an E. coli specific sensor for hydrogen peroxide.
BBa_J37032BBa_J37032 Version 1 (Component)GFP expression controlled by LuxR promoter
RFP2BBa_I715023 Version 1 (Component)Carboxyl portion of RFP
BBa_I12036BBa_I12036 Version 1 (Component)Modified lamdba Prm promoter (cooperative repression by 434 cI)
BBa_I714031BBa_I714031 Version 1 (Component)OriT-R (Origin of Transfer for the R751-plasmid nic region)
BBa_K750000BBa_K750000 Version 1 (Component)pBADGLT:unstable gfp expression device activated by arabinose
RFP1BBa_I715022 Version 1 (Component)Amino Portion of RFP
BBa_K1351005BBa_K1351005 Version 1 (Component)SigD-dependent flagellin promoter (Phag) of Bacillus subtilis
BBa_K1351004BBa_K1351004 Version 1 (Component)SigD-dependent promoter of the LytABC locus (PlytA) of Bacillus subtilis
BLpBBa_K238013 Version 1 (Component)Exact promoter of the blue light receptor
BBa_K750001BBa_K750001 Version 1 (Component)LuxI expression device activated by arabinose(Regulated by RBS of 1.0 strength)
Sin3BBa_K165003 Version 1 (Component)Sin3 Repression Domain