Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
PerRBO_9186 Version 1 (Component) BBa_K1995016BBa_K1995016 Version 1 (Component)IR (INP-N-merR)
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
BBa_K1460004BBa_K1460004 Version 1 (Component)Anderson Promoter + MerT + MerP + ter
BBa_I728456BBa_I728456 Version 1 (Component)MerRT: Mercury-Inducible Promoter+RBS (MerR + part of MerT)
BBa_K2123202BBa_K2123202 Version 1 (Component)MerT + MerP (Hg transporters) + MerB (Organomercurial Lyase) + MerA (Mercuric Reductase) + B0015
BBa_K346001BBa_K346001 Version 1 (Component)RBS (B0034) + MerR (mercury-responsive transcription factor)
BBa_K1995014BBa_K1995014 Version 1 (Component)IA (INP-N-merA)
BBa_K1995001BBa_K1995001 Version 1 (Component)IA (INP-N-merA)
NpuDnaE(N)BBa_K1362400 Version 1 (Component)NpuDnaE N-Intein cloning piece
BBa_K1758343BBa_K1758343 Version 1 (Component)MerR activator under constitutive promoter and induceble merT promoter with 5 UTR -sfGFP
BBa_K249008BBa_K249008 Version 1 (Component)YFP with N-terminal Arganine Tag
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
RFC105 ABBa_K1362414 Version 1 (Component)N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A
BBa_K1420004BBa_K1420004 Version 1 (Component)merR family transcriptional regulator, regulatory protein for mer operon
BBa_K1471007BBa_K1471007 Version 1 (Component)RBS - MerB - RBS - MerE.
BBa_K346089BBa_K346089 Version 1 (Component)T7 promoter(BBa_I719005)+MerT+MerP+MerC(the facilitation module of mercury absorption)
IRBBa_K658012 Version 1 (Component)3OC6HSL Sender and Receiver Device Driven by PLlac 0-1
BBa_K1423000BBa_K1423000 Version 1 (Component)BCLA N-terminal Domain
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
CBDcipABBa_K1615111 Version 1 (Component)CBDcipA with N and C-terminal linker in RFC25
BBa_I759001BBa_I759001 Version 1 (Component)pTet-spacer-N
IFPBBa_K256008 Version 1 (Component)Infrared Protein (IFP 1.4)
BBa_K1471012BBa_K1471012 Version 1 (Component)RBS - MerE - RBS - MerB - RBS - GFP
1NpuE(N*)BBa_K1362102 Version 1 (Component)RBS + NpuDnaE N-intein RFC[105] non-splicing control construct (with His6)
BBa_K864202BBa_K864202 Version 1 (Component)MarR(G95S) super-repressor
BBa_K2123205BBa_K2123205 Version 1 (Component)Hg transporter protein: RBS + MerT + RBS + MerP
RFC105 NNBBa_K1362415 Version 1 (Component)N-terminal splicing overhang TGCT=Cys+1/3 Leu|Ile RFC[105] overhang NN
R0011-NBBa_K1725080 Version 1 (Component)Promoter (lacI regulated, lambda pL hybrid) with extra Nhe I site
N-carrierBBa_K1362053 Version 1 (Component)Carrier for RFC[105] N-terminal inserts
BBa_K315007BBa_K315007 Version 1 (Component)Lox N forward
lacZ aBBa_E0033 Version 1 (Component)LacZ alpha fragment; complements matching N-terminal deletion mutant (lacZ-omega)
TerDnaE3(NBBa_K1362130 Version 1 (Component)RBS + TerDnaE3 N-intein RFC[105] assembly construct (with His6)
SspDnaB(N*BBa_K1362142 Version 1 (Component)RBS + SspDnaB N-intein RFC[105] non-splicing control construct (with His6)
SspDnaB(N)BBa_K1362140 Version 1 (Component)RBS + SspDnaB N-intein RFC[105] assembly construct (with His6)
SspDnaX(N)BBa_K1362110 Version 1 (Component)RBS + SspDnaX N-intein RFC[105] assembly construct (with His6)
SspGyrB(N)BBa_K1362120 Version 1 (Component)RBS + SspGyrB N-intein RFC[105] assembly construct (with His6)
BBa_K1460007BBa_K1460007 Version 1 (Component)Anderson Promoter + merT + merP + Ter + pT7 + GST-CRS5 + Ter
His-ScaffoBBa_K1602027 Version 1 (Component)Protein scaffold with N-terminal HisTag
NAGABBa_K1483000 Version 1 (Component)α-N-Acetylgalactosamindase