iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

pSC101
BBa_I50041 Version 1 (Component)
pSC101 origin of replication, reverse

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

pSB1C3
pSB1C3 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

BBa_I714031
BBa_I714031 Version 1 (Component)
OriT-R (Origin of Transfer for the R751-plasmid nic region)

p15A
BBa_I50032 Version 1 (Component)
p15A replication origin

OriTF
BBa_J01002 Version 1 (Component)
OriT-F (Origin of Transfer for the F-plasmid nic region)

BBa_I714030
BBa_I714030 Version 1 (Component)
OriT-F (Origin of Transfer for the F-plasmid nic region)

BBa_I714032
BBa_I714032 Version 1 (Component)
OriT-S (Origin of Transfer for the pSC101-plasmid nic region)

BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

GFP report
BBa_E0240 Version 1 (Component)
GFP generator

YFP
BBa_E0032 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

SEGA021
SEGA021 Version 1 (Component)
natural linear DNA.

mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

SEGA022
SEGA022 Version 1 (Component)
natural linear DNA.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

OriT-RP4
BBa_K125320 Version 1 (Component)
OriT-RP4 (Origin of transfer for the RP4 plasmid)

BBa_J56012
BBa_J56012 Version 1 (Component)
Invertible sequence of dna includes Ptrc promoter

BBa_K543020
BBa_K543020 Version 1 (Component)
OriTr-GFP

OriTRP4
BBa_K1439000 Version 1 (Component)
Origin of transfer for the RP4-plasmid nic region.

pSC101
BBa_I50042 Version 1 (Component)
pSC101 origin of replication

hixC
BBa_J44000 Version 1 (Component)
hixC binding site for Salmonella typhimurium Hin recombinase

GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

tADH1
BBa_J63002 Version 1 (Component)
ADH1 terminator from S. cerevisiae

R6K
BBa_J61001 Version 1 (Component)
[R6K] Origin of replication

BBa_K640002
BBa_K640002 Version 1 (Component)
oriT - Interspecies origin of transfer

BBa_I13401
BBa_I13401 Version 1 (Component)
GFP reporter for RHS of library test constructs

BBa_I13507
BBa_I13507 Version 1 (Component)
Screening plasmid intermediate

BBa_M1355
BBa_M1355 Version 1 (Component)
RS1

pSB1A1
pSB1A1 Version 1 (Component)
pUC19 with a BioBrick cloning site (Replaced by pSB1A3)

f1 ori
BBa_K314110 Version 1 (Component)
f1 origin

BBa_K880005
BBa_K880005 Version 1 (Component)
Strong promoter, strong RBS combination for high expression levels of proteins