Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
pT7BBa_I719005 Version 1 (Component)T7 Promoter
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
BBa_I712074BBa_I712074 Version 1 (Component)T7 promoter (strong promoter from T7 bacteriophage)
BBa_B0016BBa_B0016 Version 1 (Component)Terminator (T7 RNAP specific, T_Phi)
T7 RBSBBa_K1362090 Version 1 (Component)strong T7 RBS
BBa_K1321338BBa_K1321338 Version 1 (Component)T7 Expression vector
cI+luxRBBa_R0065 Version 1 (Component)Promoter (lambda cI and luxR regulated -- hybrid)
BBa_I2032BBa_I2032 Version 1 (Component)T7 RNA polymerase
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K199118BBa_K199118 Version 1 (Component)T7 promoter + RBS + RFP
BBa_I766556BBa_I766556 Version 1 (Component)pAdh (Strong) Promoter
BBa_R0085BBa_R0085 Version 1 (Component)T7 Consensus Promoter Sequence
BBa_B0013BBa_B0013 Version 1 (Component)TE from coliphage T7 (+/-)
BBa_R0182BBa_R0182 Version 1 (Component)T7 RNAP promoter
padBO_32952 Version 1 (Component) T7stopBBa_J18913 Version 1 (Component)T7 terminator (incl. STOP)
T7startBBa_J18912 Version 1 (Component)T7 promoter + RBS + START
T7BBa_K145014 Version 1 (Component)T7 RNA Polymerase with UmuD derived tag
BBa_R0184BBa_R0184 Version 1 (Component)T7 promoter (lacI repressible)
BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
BBa_K784002BBa_K784002 Version 1 (Component)T7 Terminator
BBa_K731721BBa_K731721 Version 1 (Component)T7 terminator
BBa_K398018BBa_K398018 Version 1 (Component)ADH generator
BBa_K165015BBa_K165015 Version 1 (Component)pADH1 yeast constituative promoter
BBa_I766217BBa_I766217 Version 1 (Component)Stop-D-BamHI-Adh Terminator Adaptor
BBa_K1072001BBa_K1072001 Version 1 (Component)NADH Dehydrogenase Coding Region
BBa_K200028BBa_K200028 Version 1 (Component)Protease resistant PAH
T7polBBa_K145001 Version 1 (Component)T7 RNA polymerase
BBa_K763005BBa_K763005 Version 1 (Component)pADH2 + Gene encoding YAP1 protein
fadHBO_31653 Version 1 (Component) rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K1351001BBa_K1351001 Version 1 (Component)Contactin-4-derived peptide binding to NADH Oxidase of S. pneumoniae
BBa_K608002BBa_K608002 Version 1 (Component)strong Promoter and strong RBS
BBa_K1072002BBa_K1072002 Version 1 (Component)NADH dehydrogenase
PadRBO_10873 Version 1 (Component) padRBO_31090 Version 1 (Component) PadCBO_26685 Version 1 (Component)