Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

pSC101
BBa_I50041 Version 1 (Component)
pSC101 origin of replication, reverse

p15A
BBa_I50032 Version 1 (Component)
p15A replication origin

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

R6K
BBa_J61001 Version 1 (Component)
[R6K] Origin of replication

BBa_J56012
BBa_J56012 Version 1 (Component)
Invertible sequence of dna includes Ptrc promoter

BBa_Z0291
BBa_Z0291 Version 1 (Component)
T7.2 primary origin of replication

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

pSC101
BBa_I50042 Version 1 (Component)
pSC101 origin of replication

f1 ori
BBa_K314110 Version 1 (Component)
f1 origin

BBa_K617003
BBa_K617003 Version 1 (Component)
R6K origin of replication

BBa_I714031
BBa_I714031 Version 1 (Component)
OriT-R (Origin of Transfer for the R751-plasmid nic region)

BBa_K607035
BBa_K607035 Version 1 (Component)
pUC18 replication origin

BBa_K640003
BBa_K640003 Version 1 (Component)
Ori1600- Pseudomonas origin of replication

BBa_K1207000
BBa_K1207000 Version 1 (Component)
Gram positive origin of replication

OriV
BBa_K125340 Version 1 (Component)
Origin of Vegetative Replication

BBa_J70510
BBa_J70510 Version 1 (Component)
Mesoplasma florum origin of replication

BBa_J70504
BBa_J70504 Version 1 (Component)
Mesoplasma florum origin of replication

BBa_J70507
BBa_J70507 Version 1 (Component)
Mesoplasma florum origin of replication

pUC19 ori
BBa_I50022 Version 1 (Component)
Minimal pUC19-derived high copy replication origin

BBa_K543020
BBa_K543020 Version 1 (Component)
OriTr-GFP

R6K ori
BBa_K300998 Version 1 (Component)
[R6K] Origin of replication (rev)

BBa_K112125
BBa_K112125 Version 1 (Component)
OriV origin of replication

Rep
BBa_K125800 Version 1 (Component)
Origin of Replication with Replication Proteins

BBa_J72161
BBa_J72161 Version 1 (Component)
ColE2 origin of replication

OriT-RP4
BBa_K125320 Version 1 (Component)
OriT-RP4 (Origin of transfer for the RP4 plasmid)

BBa_J70506
BBa_J70506 Version 1 (Component)
Mesoplasma florum origin of replication

BBa_J70503
BBa_J70503 Version 1 (Component)
Mesoplasma florum origin of replication

BBa_J70505
BBa_J70505 Version 1 (Component)
Mesoplasma florum origin of replication

BBa_J70509
BBa_J70509 Version 1 (Component)
Mesoplasma florum origin of replication

BBa_J70508
BBa_J70508 Version 1 (Component)
Mesoplasma florum origin of replication

pSC101
BBa_I50040 Version 1 (Component)
nonfunctional pSC101 origin of replication

pUC19 ori
BBa_I50020 Version 1 (Component)
Minimal pUC19-derived high copy replication origin