Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_B0012BBa_B0012 Version 1 (Component)TE from coliphageT7
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
rrnOrrnO_ter Version (Component) pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
TerTer Version (Component) pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
BBa_K364331BBa_K364331 Version 1 (Component)TRE-PolyA in pBSB1A3
pSB1T3pSB1T3 Version 1 (Component)High copy BioBrick assembly plasmid
CreBBa_J61047 Version 1 (Component)Cre DNA recombinase
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
polyABBa_J176009 Version 1 (Component)polyA2
BBa_K626000BBa_K626000 Version 1 (Component)TRE-Bax-PolyA in PSB1A3 (expression vector)
T1_TET1_TE Version 1 (Component) polyABBa_J176042 Version 1 (Component)polyA
BBa_K364332BBa_K364332 Version 1 (Component)TRE-Gal4-PXR-PolyA in PSB1A3 (expression vector)
BBa_K364333BBa_K364333 Version 1 (Component)TRE-Gal4-EcR-PolyA in PSB1A3 (expression vector)
BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
pREBBa_K116603 Version 1 (Component)pRE promoter from λ phage
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
pSB1A2BBa_K300988 Version 1 (Component)pSB1A2 without Prefix and Suffix
BBa_K1875002BBa_K1875002 Version 1 (Component)This part contains an RBG polyA terminator
rrnBrrnB_T1_ter Version (Component)