Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
BBa_K1619001BBa_K1619001 Version 1 (Component)medh2 (NAD+ dependent methanol dehydrogenase)
pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
cI+luxRBBa_R0065 Version 1 (Component)Promoter (lambda cI and luxR regulated -- hybrid)
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K118003BBa_K118003 Version 1 (Component)crtI coding sequence encoding phytoene dehydrogenase
NFkBBBa_J52010 Version 1 (Component)NFkappaB-dependent promoter
BBa_K1038000BBa_K1038000 Version 1 (Component)Methanol-dependent promoter
BBa_K1038001BBa_K1038001 Version 1 (Component)Methanol-dependent promoter
MorABBa_K1615000 Version 1 (Component)Morphine-6-dehydrogenase RFC25
BBa_I725014BBa_I725014 Version 1 (Component)Butyraldehyde dehydrogenase
pET fusionBBa_K1122673 Version 1 (Component)Ethanol production module
Bt-ALDHBBa_K398006 Version 1 (Component)Medium-Chain Aldehyde Dehydrogenase
3alpha-HSDBBa_K1674001 Version 1 (Component)3alpha-hydroxysteroid dehydrogenase
BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
BBa_M11008BBa_M11008 Version 1 (Component)NADH-dependent butanol dehydrogenase B (bdhB/BDH II)
BBa_M11007BBa_M11007 Version 1 (Component)NADH-dependent butanol dehydrogenase A (bdhA/BDH I)
BBa_I725015BBa_I725015 Version 1 (Component)Butanol dehydrogenase
BBa_K936011BBa_K936011 Version 1 (Component)Glycolaldehyde Dehydrogenase
BBa_I725013BBa_I725013 Version 1 (Component)Butyryl CoA dehyrogenase
BBa_K118005BBa_K118005 Version 1 (Component)rbs+crtI (phytoene dehydrogenase)
BBa_I725011BBa_I725011 Version 1 (Component)B-hydroxy butyryl coA dehydrogenase
BBa_K861020BBa_K861020 Version 1 (Component)FadE ,acyl-CoA dehydrogenase
BBa_K749005BBa_K749005 Version 1 (Component)PFDH, glutathion-independent formaldehyde dehydrogenase from Pseudomonas putida
gldABBa_K1172201 Version 1 (Component)GldA - glycerol dehydrogenase from Escherichia coli
BBa_K1072001BBa_K1072001 Version 1 (Component)NADH Dehydrogenase Coding Region
BBa_J13023BBa_J13023 Version 1 (Component)3OC6HSL+LuxR dependent POPS/RIPS generator
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K608002BBa_K608002 Version 1 (Component)strong Promoter and strong RBS
BBa_I764001BBa_I764001 Version 1 (Component)Ethanol regulated promoter AOX1
nadEBBa_K1373000 Version 1 (Component)This part encodes NAD synthetase
BBa_K1072002BBa_K1072002 Version 1 (Component)NADH dehydrogenase
BBa_K857000BBa_K857000 Version 1 (Component)acetaldehyde dehydrogenase
BBa_K179001BBa_K179001 Version 1 (Component)leucine dehydrogenase
BBa_K1674004BBa_K1674004 Version 1 (Component)zwf - Glucose-6-Phosphate-Dehydrogenase from E.coli
BBa_K1719009BBa_K1719009 Version 1 (Component)Circuit encoding leucine dehydrogenase and formate dehydrogenase
BBa_K1719010BBa_K1719010 Version 1 (Component)Circuit encoding leucine dehydrogenase and formate dehydrogenase
mCherryBBa_J06702 Version 1 (Component)mCherry, bacterial with RBS and forward terminator
BBa_K1719000BBa_K1719000 Version 1 (Component)A gene encoding leucine dehydrogenase