Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

tetR
BBa_C0040 Version 1 (Component)
tetracycline repressor from transposon Tn10 (+LVA)

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

eyfp
BBa_E0030 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL

pLacIQ1-RB
BBa_K193406 Version 1 (Component)
the coding is the same as BBa_193404 the back bone is changed onto pSB6A1

ecfp
BBa_E0020 Version 1 (Component)
engineered cyan fluorescent protein derived from A. victoria GFP

pSB1A2
pSB1A2 Version 1 (Component)
pSB1A2 (Replaced by pSB1A3)

BBa_I13404
BBa_I13404 Version 1 (Component)
RBS.GFP + PBad CFP

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

pSB6A1
pSB6A1 Version 1 (Component)
pBR322 converted to BioBrick vector (formally BBa_I739201)

BBa_K737033
BBa_K737033 Version 1 (Component)
galK is the leader sequence of galactokinase (GalK)

amyE 5 IS
BBa_K143001 Version 1 (Component)
5??? Integration Sequence for the amyE locus of B. subtilis

BBa_I746916
BBa_I746916 Version 1 (Component)
superfolder GFP coding sequence

BBa_K1114300
BBa_K1114300 Version 1 (Component)
This is the MoClo formatted part of BBa_B0015.

aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

RBS-pcyA-t
BBa_K193403 Version 1 (Component)
teminator is located downstream of the BBa_193402

pLacIQ1-RB
BBa_K193401 Version 1 (Component)
cph8 under the control of Plac

RBS-pcyA
BBa_K193402 Version 1 (Component)
RBS is located upstream of pcyA

BBa_K934024
BBa_K934024 Version 1 (Component)
Plux/tet hybrid promoter

pSB1A1
pSB1A1 Version 1 (Component)
pUC19 with a BioBrick cloning site (Replaced by pSB1A3)

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

BBa_K737058
BBa_K737058 Version 1 (Component)
Spot42 is a multitarget small RNA that mediates the discoordinate expression of the E.coli galactose

RBS-ho1
BBa_K193400 Version 1 (Component)
RBS is located upstream of ho1

lacZ-alpha
BBa_I732006 Version 1 (Component)
lacZ alpha fragment

pSB4A1
pSB4A1 Version 1 (Component)
pSB4A1 (Replaced by pSB4A5)

Screening
pSB1A10 Version 1 (Component)
Screening Plasmid v1.0

BBa_S03404
BBa_S03404 Version 1 (Component)
--Specify Parts List--

BBa_K1934040
BBa_K1934040 Version 1 (Component)
RFP under the control of pTAC promoter

pSB4C1
pSB4C1 Version 1 (Component)
pCK01 converted into BioBrick vector (formerly BBa_I739202)

BBa_K1231000
BBa_K1231000 Version 1 (Component)
The asr promoter is a pH-responsive promoter.

RBS-cph8
BBa_K193405 Version 1 (Component)
RBS is located upstream of cph8

RBS+eGFP+H
BBa_K193204 Version 1 (Component)
EGFP(His tag+) downstream with RBS