Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
ATGATG Version 1 (Component) SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
RFC105 ABBa_K1362414 Version 1 (Component)N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A
BBa_K1162009BBa_K1162009 Version 1 (Component)10x-Histidine (10x-His) Tag with Met (ATG) For N-terminal purification
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K249008BBa_K249008 Version 1 (Component)YFP with N-terminal Arganine Tag
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
BBa_J04031BBa_J04031 Version 1 (Component)GFP w/LVA tag
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
HABBa_I712008 Version 1 (Component)HA affinity tag
BBa_K249006BBa_K249006 Version 1 (Component)Fusion EYFP with C-terminal Arginine Tag
NLSBBa_J176008 Version 1 (Component)NLS
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
PESTBBa_J176018 Version 1 (Component)PEST
BBa_K331001BBa_K331001 Version 1 (Component)ECFP with N-terminal Arginine Tag
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
RFC105 NNBBa_K1362415 Version 1 (Component)N-terminal splicing overhang TGCT=Cys+1/3 Leu|Ile RFC[105] overhang NN
RFC105 ZBBa_K1362421 Version 1 (Component)C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z
FurBO_11498 Version 1 (Component) NLSmycSTOPBBa_J176031 Version 1 (Component)NLS myc stop
BBa_K1162010BBa_K1162010 Version 1 (Component)promoter+rbs and N-terminal 10x His Tag
HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
HIC generaBBa_K1602020 Version 1 (Component)Inducible generator of Humicola insolens cutinase (HIC) with N-terminal His-Tag
HisTag-HICBBa_K1602018 Version 1 (Component)Humicola insolens cutinase with N-terminal His-Tag
BBa_K331002BBa_K331002 Version 1 (Component)ECFP with C-terminal Arginine Tag
BBa_J04051BBa_J04051 Version 1 (Component)RFP with tag
BBa_I13602BBa_I13602 Version 1 (Component)Tet operator with CFP reporter (with LVA tag) [R/Tc+]
BBa_K1446002BBa_K1446002 Version 1 (Component)superfolder GFP with N-terminal pdu-microcompartment tag
BBa_I13600BBa_I13600 Version 1 (Component)Tet with CFP reporter (without LVA tag)
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
N-carrierBBa_K1362053 Version 1 (Component)Carrier for RFC[105] N-terminal inserts
BBa_K1333002BBa_K1333002 Version 1 (Component)M13 bacteriophage g3p with start codon of "ATG" and a FLAG tag on C-terminal