SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

pSB1C3
pSB1C3 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

BBa_J64101
BBa_J64101 Version 1 (Component)
ColE1 biobrick plasmid with backward terminator

BBa_K156002
BBa_K156002 Version 1 (Component)
BioBrick placeholder 2 (Prefix - ApoI (NotI) NheI - Suffix)

BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

BBa_K648013
BBa_K648013 Version 1 (Component)
GFP with Standard 25 Prefix/Suffix

BBa_K156001
BBa_K156001 Version 1 (Component)
BioBrick Placeholder 1 (Prefix - ApoI (NotI) AvrII - Suffix)

BBa_K156004
BBa_K156004 Version 1 (Component)
BioBrick placeholder 4 (Prefix - ApoI (NotI) SbfI - Suffix)

BBa_K156003
BBa_K156003 Version 1 (Component)
BioBrick placeholder 3 (Prefix - ApoI (NotI) NsiI - Suffix)

BBa_K156006
BBa_K156006 Version 1 (Component)
BioBrick placeholder 6 (Prefix - MfeI (NotI) NheI - Suffix)

BBa_K1321300
BBa_K1321300 Version 1 (Component)
pSEVA331-Bb - pSEVA331 with biobrick prefix and suffix

Prefix
BBa_G00000 Version 1 (Component)
BioBrick cloning site prefix

Suffix
BBa_G00001 Version 1 (Component)
BioBrick cloning site suffix

BBa_K156005
BBa_K156005 Version 1 (Component)
BioBrick placeholder 5 (Prefix - MfeI (NotI) AvrII - Suffix)

BBa_K156008
BBa_K156008 Version 1 (Component)
BioBrick placeholder 8 (Prefix - MfeI (NotI) SbfI - Suffix)

BBa_K156007
BBa_K156007 Version 1 (Component)
BioBrick placeholder 7 (Prefix - MfeI (NotI) Nsil - Suffix)

pSB1A2
BBa_K300988 Version 1 (Component)
pSB1A2 without Prefix and Suffix

Restriction_sites
Restriction_sites Version 1 (Component)
SacI - KpnI - SmaI - BamHI - XbaI - SalI - PstI - SphI - HindIII - NotI

pSB1AT3
pSB1AT3 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_I13452
BBa_I13452 Version 1 (Component)
Adds another BioBrick site

BBa_K299107
BBa_K299107 Version 1 (Component)
T.xbaI.G (T followed by xbaI site and additional G to behave like biobrick prefix after xbaI digest)

BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

BBa_J54100
BBa_J54100 Version 1 (Component)
Prefix-Suffix(deltaP)

BBa_K121016
BBa_K121016 Version 1 (Component)
Tokyo Standard prefix suffix RBS

BBa_K371049
BBa_K371049 Version 1 (Component)
MPF(meta-prefix)

BBa_K1045010
BBa_K1045010 Version 1 (Component)
RBS BBa_B0034 with inversed Pre- and Suffix

BBa_K648012
BBa_K648012 Version 1 (Component)
LacZa wtih Standard 25 Prefix/Suffix

BBa_K371050
BBa_K371050 Version 1 (Component)
MSF(meta-suffix)

BBa_K648009
BBa_K648009 Version 1 (Component)
RecA Cleavage Site with Standard 25 Prefix/Suffix

BBa_K648008
BBa_K648008 Version 1 (Component)
TEV protease cleaveage site with Standard 25 Prefix/Suffix

BBa_J18974
BBa_J18974 Version 1 (Component)
Prefix/Suffix C

BBa_J18975
BBa_J18975 Version 1 (Component)
Prefix/Suffix D

BBa_J18973
BBa_J18973 Version 1 (Component)
Prefix/Suffix B

BBa_J18972
BBa_J18972 Version 1 (Component)
Prefix/Suffix A

BBa_K648005
BBa_K648005 Version 1 (Component)
Short Fusion Protein Linker: GGSG with standard 25 prefix/suffix

BBa_K648006
BBa_K648006 Version 1 (Component)
Long 10AA Fusion Protein Linker with Standard 25 Prefix/Suffix

BBa_K390000
BBa_K390000 Version 1 (Component)
pSB1A3_Int (BamHI, XhoI, NdeI, NheI added)

BBa_K648007
BBa_K648007 Version 1 (Component)
Medium 6AA Fusion Protein Linker: GGSGGS with Standard 25 Prefix/Suffix

BioBrick-f
BBa_G1004 Version 1 (Component)
Forward BioBrick prefix primer for amplifying BioBrick parts (BioBrick-f)

BioBrick-r
BBa_G1005 Version 1 (Component)
Reverse BioBrick suffix primer for amplifying BioBrick parts (BioBrick-r)

BBa_K1795400
BBa_K1795400 Version 1 (Component)
Truncated pSB1C3 with no Prefix or Suffix

scar
BBa_G0004 Version 1 (Component)
SpeI/NheI mixed site

scar
BBa_G0003 Version 1 (Component)
NheI/XbaI mixed site

BsaI ->
BBa_K1362425 Version 1 (Component)
BsaI restriction site for RFC[???] cloning (in part in prefix)

BBa_K371042
BBa_K371042 Version 1 (Component)
(meta-prefix)+[pduA+RBS+pduB +MSF(meta-suffix)