Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_K1957002BBa_K1957002 Version 1 (Component)HydB (C-terminally tagged) subunit of FeFe Hydrogenase
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
BBa_K1957003BBa_K1957003 Version 1 (Component)HydB (N-terminally tagged) subunit of FeFe Hydrogenase
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
BBa_K1957007BBa_K1957007 Version 1 (Component)HyaB C-terminally tagged subunit of NiFe Hydrogenase
BBa_K1957004BBa_K1957004 Version 1 (Component)HydA subunit of FeFe Hydrogenase
BBa_K1957001BBa_K1957001 Version 1 (Component)HydC subunit of FeFe Hydrogenase
BBa_K1957008BBa_K1957008 Version 1 (Component)HyaB N-terminally tagged subunit of NiFe Hydrogenase
tetA(C)bBBa_J31006 Version 1 (Component)tetracycline resistance protein TetA(C) (backwards) [cf. BBa_J31007]
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
RFC105 ZBBa_K1362421 Version 1 (Component)C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z
BBa_K249006BBa_K249006 Version 1 (Component)Fusion EYFP with C-terminal Arginine Tag
BBa_K331033BBa_K331033 Version 1 (Component)Tet Repressible C-terminal Arg Tagged ECFP (no terminator)
BBa_K1957009BBa_K1957009 Version 1 (Component)FeFe Hydrogenase
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
BBa_K331031BBa_K331031 Version 1 (Component)Tet Repressible C-terminal Arg Tagged EYFP (no terminator)
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
BBa_K331002BBa_K331002 Version 1 (Component)ECFP with C-terminal Arginine Tag
His6BBa_K1362431 Version 1 (Component)N-terminal His6 (C-Intein)
RFC105 CCBBa_K1362419 Version 1 (Component)C-terminal splicing overhang CAAC=1/3?+Asn RFC[105] standard overhang CC
BBa_K1333005BBa_K1333005 Version 1 (Component)M13 bacteriophage g8p with a FLAG tag on C-terminal
hybBBBa_J45503 Version 1 (Component)hybB Cold Shock Promoter
CBDcipABBa_K1615111 Version 1 (Component)CBDcipA with N and C-terminal linker in RFC25
BBa_K118003BBa_K118003 Version 1 (Component)crtI coding sequence encoding phytoene dehydrogenase
BBa_K1321014BBa_K1321014 Version 1 (Component)CBDCipA with N and C-terminal linker
C-IgAPBBa_K195410 Version 1 (Component)C-terminal of IgA protease
BBa_K1957005BBa_K1957005 Version 1 (Component)HyaA subunit of NiFe Hydrogenase
BBa_K1957006BBa_K1957006 Version 1 (Component)HyaC subunit of NiFe Hydrogenase
BBa_K209400BBa_K209400 Version 1 (Component)AarI B-C part, hM4D
eYFP_SH3 gBBa_K1602041 Version 1 (Component)Inducible generator of eYFP with C-terminal SH3 ligand
BBa_K1333002BBa_K1333002 Version 1 (Component)M13 bacteriophage g3p with start codon of "ATG" and a FLAG tag on C-terminal
BBa_K535002BBa_K535002 Version 1 (Component)HydA (hydrogenase I)-> Clostridium acetobutylicum ATCC 824
BBa_K331035BBa_K331035 Version 1 (Component)C-terminal Arg Tagged EYFP with transcriptional terminator