SynBioHub

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Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

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Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

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iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

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Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency

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BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

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BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

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BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

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BBa_J04500
BBa_J04500 Version 1 (Component)
IPTG inducible promoter with RBS

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BBa_K1351030
BBa_K1351030 Version 1 (Component)
LMU Bacillus RBS collection 3

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BBa_K1351031
BBa_K1351031 Version 1 (Component)
LMU Bacillus RBS collection 4

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BBa_K1351028
BBa_K1351028 Version 1 (Component)
LMU Bacillus RBS collection 1

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BBa_K1351032
BBa_K1351032 Version 1 (Component)
LMU Bacillus RBS collection 5

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BBa_K1351034
BBa_K1351034 Version 1 (Component)
LMU Bacillus RBS collection 7

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BBa_K1351033
BBa_K1351033 Version 1 (Component)
LMU Bacillus RBS collection 6

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BBa_K1351029
BBa_K1351029 Version 1 (Component)
LMU Bacillus RBS collection 2

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pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

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T7 RBS
BBa_K1362090 Version 1 (Component)
strong T7 RBS

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RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

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BBa_K090505
BBa_K090505 Version 1 (Component)
''Bacillus subtilis'' consensus RBS

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//collections
collections Version 1 (Collection)

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BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

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//rbs
rbs Version 1 (Collection)

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RBS-spoVG
BBa_K143021 Version 1 (Component)
SpoVG ribosome binding site (RBS) for B. subtilis

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RBS_SpaR
RBS_SpaR Version (Component)

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RBS_SpaK
RBS_SpaK Version (Component)

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penI
BBa_C0074 Version 1 (Component)
penI repressor from Bacillus licheniformis (+LVA)

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BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030

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RBS_SpaR_seq
RBS_SpaR_seq Version (Sequence)

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RBS_SpaK_seq
RBS_SpaK_seq Version (Sequence)

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BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

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BBa_K2066506
BBa_K2066506 Version 1 (Component)
RiboJ (Ribozyme Insulator) Lou et. al. 2012

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RBS_cassette
RBS_cassette Version 1 (Component)
AvrII restriction site (cctagg), overlapped with RBS (aggagga)

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R37
BBa_K780002 Version 1 (Component)
Strong RBS for Bacillus Subtilis

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eyfp
BBa_E0031 Version 1 (Component)
EYFP (RBS+ LVA-)

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BBa_K165002
BBa_K165002 Version 1 (Component)
Kozak sequence (yeast RBS)

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PBS_F24
PBS_F24 Version 1 (Component)

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ecfp
BBa_E0021 Version 1 (Component)
ECFP (RBS+ LVA-)

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RBS-GFP-Te
BBa_I763020 Version 1 (Component)
RBS-GFP (+LVA Tag)-Terminators

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rbs+crtZ
BBa_I742158 Version 1 (Component)
crtZ (beta-carotene hydroxylase) with native rbs

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BBa_K608002
BBa_K608002 Version 1 (Component)
strong Promoter and strong RBS

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BBa_E0422
BBa_E0422 Version 1 (Component)
ECFP (RBS+ LVA+ TERM) (B0034.E0022.B0015)

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RBS_SpaS
RBS_SpaS Version (Component)

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BBa_E0420
BBa_E0420 Version 1 (Component)
ECFP (RBS+ LVA- TERM) (B0034.E0020.B0015)

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BBa_K199118
BBa_K199118 Version 1 (Component)
T7 promoter + RBS + RFP

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BBa_K2066510
BBa_K2066510 Version 1 (Component)
Strong RBS from Lou et. al 2012

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scar
BBa_G0000 Version 1 (Component)
SpeI/XbaI scar for RBS-CDS junctions

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