Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Scar 25BBa_B0105 Version 1 (Component)RFC 25 Scar Sequence
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
BBa_K2170101BBa_K2170101 Version 1 (Component)Nanoluciferase with N-terminal biotin acceptor peptide (BAP) (BAP_NanoLuc) in RFC[25]
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
RFC 37BBa_K245009 Version 1 (Component)RFC 37 Scar Sequence
BBa_K1321005BBa_K1321005 Version 1 (Component)Synthetic Phytochelatin EC(20) RFC[25]
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
RFC105 ABBa_K1362414 Version 1 (Component)N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K2170203BBa_K2170203 Version 1 (Component)Biotin acceptor peptide (BAP) in RFC[25]
BBa_K1321339BBa_K1321339 Version 1 (Component)CBDcenA+Linker, RFC 25 standard
BBa_K249008BBa_K249008 Version 1 (Component)YFP with N-terminal Arganine Tag
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K1321009BBa_K1321009 Version 1 (Component)Nickel Binding Protein (NiBP) Freiburg format (RFC[25])
BBa_K1159303BBa_K1159303 Version 1 (Component)Signal Peptide of SERK Receptor from <i>Physcomitrella patens</i> in RFC[25]
BBa_K1159316BBa_K1159316 Version 1 (Component)SERK-Receptor TMD with C-terminal GFP and N-terminal <i>Strep</i>-tag II TEV-site linker in RFC[25]
RFC105 NNBBa_K1362415 Version 1 (Component)N-terminal splicing overhang TGCT=Cys+1/3 Leu|Ile RFC[105] overhang NN
BFPBBa_K592100 Version 1 (Component)Blue Fluorescent Protein (mTagBFP)
BLpBBa_K238013 Version 1 (Component)Exact promoter of the blue light receptor
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
BBa_K1321011BBa_K1321011 Version 1 (Component)SmtA metallothionein in Freiburg format (RFC[25])
CBDcipABBa_K1615111 Version 1 (Component)CBDcipA with N and C-terminal linker in RFC25
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
BBa_K1159201BBa_K1159201 Version 1 (Component)Splitted and engineered C-terminal FbaB for isopeptide bound formation (SpyTag) in RFC[25]
RFC105 ZBBa_K1362421 Version 1 (Component)C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z
BBa_K2170140BBa_K2170140 Version 1 (Component)N-terminal part of prokaryotic biotin binding receptor (TetR_TetO_OmpA_eMA) in RFC[25] N-part
BBa_K648013BBa_K648013 Version 1 (Component)GFP with Standard 25 Prefix/Suffix
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K2170100BBa_K2170100 Version 1 (Component)Nanoluciferase with C-terminal StrepTag (NanoLuc_StrepTag) in RFC[25]
BBa_K1321012BBa_K1321012 Version 1 (Component)fMT metallothionein in Freiburg format (RFC[25])
BBa_K1159314BBa_K1159314 Version 1 (Component)TMD with N-terminal Signal Peptide of SERK Receptor from ''P. patens'' in RFC[25] N-Part
BBa_K2170051BBa_K2170051 Version 1 (Component)Secretory prokaryotic biotin presenting receptor with biotin acceptor peptide
His-ScaffoBBa_K1602027 Version 1 (Component)Protein scaffold with N-terminal HisTag
BBa_K1159200BBa_K1159200 Version 1 (Component)Splitted and engineered N-terminal FbaB for isopeptide bound formation (SpyCatcher) in RFC[25]
BBa_K1321342BBa_K1321342 Version 1 (Component)sfGFP fused to CBDcex in RFC 25
BBa_K1423000BBa_K1423000 Version 1 (Component)BCLA N-terminal Domain
BBa_K1159304BBa_K1159304 Version 1 (Component)Signal Peptide of Ig Kappa chain from <i>Mus musculus</i> in RFC[25] N-part