iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
BBa_J61101BBa_J61101 Version 1 (Component)Ribosome Binding Site Family Member
BBa_J61120BBa_J61120 Version 1 (Component)Ribosome Binding Site Family Member
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_J61100BBa_J61100 Version 1 (Component)Ribosome Binding Site Family Member
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
PBS_F24PBS_F24 Version 1 (Component) BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
RBS-spoVGBBa_K143021 Version 1 (Component)SpoVG ribosome binding site (RBS) for B. subtilis
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_J85600BBa_J85600 Version 1 (Component)attB1 recombination site
FurBO_11498 Version 1 (Component) BBa_J61127BBa_J61127 Version 1 (Component)Ribosome Binding Site Family Member
BBa_K1585999BBa_K1585999 Version 1 (Component)lacI binding site
BBa_J61107BBa_J61107 Version 1 (Component)Ribosome Binding Site Family Member
pLacBBa_K1638000 Version 1 (Component)Lac operator
BBa_K242004BBa_K242004 Version 1 (Component)Operator binding site for Cox
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
RBS-GsiBBBa_K143020 Version 1 (Component)GsiB ribosome binding site (RBS) for B. subtilis
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
cI lamBBa_I9201 Version 1 (Component)lambda cI operator/binding site
BBa_R2109BBa_R2109 Version 1 (Component)Promoter with operator site for C2003
RBS_cassetteRBS_cassette Version 1 (Component)AvrII restriction site (cctagg), overlapped with RBS (aggagga)
VRBBa_G00102 Version 1 (Component)Reverse BioBrick primer annealing site (VR binding site)
BBa_K165012BBa_K165012 Version 1 (Component)Gli1 binding sites
BBa_J61117BBa_J61117 Version 1 (Component)Ribosome Binding Site Family Member
BBa_K118012BBa_K118012 Version 1 (Component)Synthetic ribosome binding site added by Son of Babel procedure
<- BsaIBBa_K1362423 Version 1 (Component)BsaI reverse restriction site for RFC[105] cloning
BBa_K1123010BBa_K1123010 Version 1 (Component)Ribosoom Binding Site
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_I13457BBa_I13457 Version 1 (Component)Improved insertion site with two RNAse E cut sites
PfadRBBa_K861060 Version 1 (Component)PfadR, synthetic promoter with tandem FadR binding site
BBa_K2180010BBa_K2180010 Version 1 (Component)Cadmium Operator - MntR Binding Site
BBa_K2180011BBa_K2180011 Version 1 (Component)Arsenic Operator - ArsR Binding Site
BBa_K2180002BBa_K2180002 Version 1 (Component)Fructose Operator - FruR Binding Site
BBa_K2180003BBa_K2180003 Version 1 (Component)Sucrose Operator - DegU Binding Site
BBa_K2066502BBa_K2066502 Version 1 (Component)1xTetO Binding Site
ArgBox8BBa_K778003 Version 1 (Component)ArgR binding sites (including 8 binding sites)