Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
GAL1BBa_J63006 Version 1 (Component)yeast GAL1 promoter
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K394001BBa_K394001 Version 1 (Component)Plasmid for Chromosomal Integration in Yeast at His3
FurBO_11498 Version 1 (Component) BBa_K165002BBa_K165002 Version 1 (Component)Kozak sequence (yeast RBS)
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K394002BBa_K394002 Version 1 (Component)Plasmid for Chromosomal Integration in Yeast at Ura3
BBa_K801012BBa_K801012 Version 1 (Component)ADH1 yeast terminator
BBa_I13507BBa_I13507 Version 1 (Component)Screening plasmid intermediate
yfpBBa_K165005 Version 1 (Component)Venus YFP, yeast optimized for fusion
BBa_K165010BBa_K165010 Version 1 (Component)ADH1 yeast transcription terminator
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
mCherryBBa_K165004 Version 1 (Component)mCherry, yeast optimized for fusion
BBa_I13504BBa_I13504 Version 1 (Component)Screening plasmid intermediate
amyE 5 ISBBa_K143001 Version 1 (Component)5??? Integration Sequence for the amyE locus of B. subtilis
pTEFBBa_K165037 Version 1 (Component)TEF2 yeast constitutive promoter
BBa_J33201BBa_J33201 Version 1 (Component)E. coli chromosomal ars promoter with arsR repressor gene
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_K392003BBa_K392003 Version 1 (Component)yeast ADH1 terminator
mCherryBBa_E2060 Version 1 (Component)derivative of mRFP1, yeast-optimized
BBa_K530008BBa_K530008 Version 1 (Component)TDH3 Yeast Promoter
mRFP1BBa_E2050 Version 1 (Component)derivative of mRFP1, yeast-optimized
P0310BBa_J63005 Version 1 (Component)yeast ADH1 promoter
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
BBa_K090403BBa_K090403 Version 1 (Component)Gram-positive Shuttle Vector for Chromosomal Integration
BBa_K309020BBa_K309020 Version 1 (Component)eCFP (for use in C. elegans chassis)
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K863205BBa_K863205 Version 1 (Component)GFP integrated in shuttle vector pECPP11JS (BBa_K863204) for integration in yeast
BBa_K530028BBa_K530028 Version 1 (Component)pRSBB403 HIS3 Integrating Yeast Shuttle Vector
OriTRBBa_J01003 Version 1 (Component)OriT-R (Origin of transfer for the R-plasmid nic region)
BBa_K863209BBa_K863209 Version 1 (Component)BBa_500002 integrated in shuttle vector pECPP11JS (BBa_K863204) for integration in yeast
BBa_K863208BBa_K863208 Version 1 (Component)tvel35 integrated in shuttle vector pECPP11JS (BBa_K863204) for integration in yeast
BBa_K863207BBa_K863207 Version 1 (Component)tvel5 integrated in shuttle vector pECPP11JS (BBa_K863204) for integration in yeast
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants