Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
ATGATG Version 1 (Component) GFP reportBBa_E0240 Version 1 (Component)GFP generator
SpacerSpacer Version 1 (Component) BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
GFP generaBBa_E0840 Version 1 (Component)GFP generator
YFPBBa_E0032 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
SEGA021SEGA021 Version 1 (Component)natural linear DNA.
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
SEGA022SEGA022 Version 1 (Component)natural linear DNA.
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
BBa_K844017BBa_K844017 Version 1 (Component)Spider Silk Generator - 10x "F" Silk Construct with His Tag
BBa_K844007BBa_K844007 Version 1 (Component)Spider Silk 1x Subunit "F" (Fewest tRNA codon optimized) with Met (ATG) added
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
PatgB4HTBBa_K844016 Version 1 (Component)Spider Silk Generator - 4x "B" Silk Construct with His Tag
LuxRBBa_I0462 Version 1 (Component)luxR Protein Generator
BBa_K844006BBa_K844006 Version 1 (Component)Spider Silk 1x Subunit "W" with Met (ATG) start codon
BBa_K844008BBa_K844008 Version 1 (Component)Spider Silk 1x Subunit "B" (Balanced tRNA codon optimized) with Met (ATG) added
BBa_M1721BBa_M1721 Version 1 (Component)Optimized Hepcidin + 6x spider silk + 10x His Tag
BBa_K1162306BBa_K1162306 Version 1 (Component)Antimicrobial spider silk generator with C-terminus 10x His-Tag
BBa_K844004BBa_K844004 Version 1 (Component)Spider Silk 1x Subunit "B" (Balanced tRNA codon optimized)
BBa_J04031BBa_J04031 Version 1 (Component)GFP w/LVA tag
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
spilk 7.0.BBa_M36500 Version 1 (Component)Spider Silk Hexamer
BBa_K844003BBa_K844003 Version 1 (Component)Spider Silk 1x Subunit "F" (Fewest tRNA codon optimized)
BBa_J13002BBa_J13002 Version 1 (Component)TetR repressed POPS/RIPS generator
BBa_K1763015BBa_K1763015 Version 1 (Component)T7 Promoter+Silk+sfGFP
BBa_K1763000BBa_K1763000 Version 1 (Component)Apis mellifera (honeybee) silk fibroin 3
BBa_M1718BBa_M1718 Version 1 (Component)Optimized Hepcidin + 1x spider silk
BBa_I731011BBa_I731011 Version 1 (Component)Spider silk with RGD sequence
BBa_K1162307BBa_K1162307 Version 1 (Component)WAM-1 antimicrobial peptide fused with 8x spider silk protein, with 10x His-Tag
BBa_M36394BBa_M36394 Version 1 (Component)Spider Silk Actuator
TamuraBBa_K1763444 Version 1 (Component)Bombyx mori silk co-spinning module
HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
HABBa_I712008 Version 1 (Component)HA affinity tag
BBa_K844012BBa_K844012 Version 1 (Component)tRNA expression cassette for spider silk "F" proteins