SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

cI lam
BBa_R0051 Version 1 (Component)
promoter (lambda cI regulated)

luxr
BBa_C0062 Version 1 (Component)
luxR repressor/activator, (no LVA?)

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

cI 434
BBa_C0052 Version 1 (Component)
cI repressor from phage 434 (+LVA)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

BBa_J07040
BBa_J07040 Version 1 (Component)
Threshold: Activation module (IS10-type cI antisense)

cI 434
BBa_R0052 Version 1 (Component)
Promoter (434 cI regulated)

lasr
BBa_C0079 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(+LVA)

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

cI HK022
BBa_C0050 Version 1 (Component)
cI repressor from phage HK022 (+LVA?)

BBa_J07039
BBa_J07039 Version 1 (Component)
Threshold: Activation module (cI antisense with hairpins)

araC
BBa_C0080 Version 1 (Component)
araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)

lasR
BBa_C0179 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(no LVA)

BBa_P0451
BBa_P0451 Version 1 (Component)
PoPS -> cI (lambda) [S0153]

BBa_J07038
BBa_J07038 Version 1 (Component)
Threshold: Activation module (cI anti-sense)

Prm +
BBa_I12006 Version 1 (Component)
Modified lamdba Prm promoter (repressed by 434 cI)

rhlR
BBa_C0071 Version 1 (Component)
rhlR repressor/activator from P. aeruginosa PA3477 (+LVA)

cI
BBa_I9200 Version 1 (Component)
cI lambda

BBa_I746352
BBa_I746352 Version 1 (Component)
delta activator from phiR73 phage

cinr
BBa_C0077 Version 1 (Component)
cinR activator from Rhizobium leguminosarum (+LVA)

cI HK022
BBa_R0050 Version 1 (Component)
Promoter (HK022 cI regulated)

rhIR
BBa_C0171 Version 1 (Component)
rhlR repressor/activator from P. aeruginosa PA3477 (no LVA)

BBa_J07037
BBa_J07037 Version 1 (Component)
Threshold: Reporter module (regulated by cI)

BBa_I1033
BBa_I1033 Version 1 (Component)
CI(1) IS10 asRNA

BBa_E0044
BBa_E0044 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212)

cI TP901
BBa_C0075 Version 1 (Component)
TP901 cI repressor from phage TP901-1 (+LVA)

BBa_I746350
BBa_I746350 Version 1 (Component)
ogr activator from P2 phage

BBa_I1023
BBa_I1023 Version 1 (Component)
CI(2) IS10 asRNA

BBa_I1063
BBa_I1063 Version 1 (Component)
CI(2) IS10 asRNA

BBa_I1013
BBa_I1013 Version 1 (Component)
CI(1) IS10 asRNA

aiiA
BBa_C0160 Version 1 (Component)
autoinducer inactivation enzyme aiiA (no LVA)

BBa_K554004
BBa_K554004 Version 1 (Component)
IL10

BBa_J07036
BBa_J07036 Version 1 (Component)
Threshold: Repression module (cI repressor with junk region)

BBa_K228236
BBa_K228236 Version 1 (Component)
cI->Terminator

cI
BBa_Q04511 Version 1 (Component)
QPI (B0034.C0051.B0015.R0065)

BBa_P0455
BBa_P0455 Version 1 (Component)
RBS.Lambda cI LVA+.Term

BBa_P0151
BBa_P0151 Version 1 (Component)
PoPS -> cI (lambda) [S0165]

BBa_C0056
BBa_C0056 Version 1 (Component)
cI repressor from phage 434 (no LVA)

BBa_K1632011
BBa_K1632011 Version 1 (Component)
fimE (wild-type)

BBa_K1632010
BBa_K1632010 Version 1 (Component)
fimB (wild-type)

BBa_K082004
BBa_K082004 Version 1 (Component)
LacI- wild type

pET fusion
BBa_K1122673 Version 1 (Component)
Ethanol production module

BBa_P0152
BBa_P0152 Version 1 (Component)
PoPS -> cI (434) [S0166]

cI TP901
BBa_R0075 Version 1 (Component)
Promoter (TP901 cI regulated)

antisense
BBa_K238005 Version 1 (Component)
Anti sense key