Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
eyfpBBa_E0030 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
YFPBBa_E0032 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
BBa_J61101BBa_J61101 Version 1 (Component)Ribosome Binding Site Family Member
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
BBa_J61120BBa_J61120 Version 1 (Component)Ribosome Binding Site Family Member
BBa_I742139BBa_I742139 Version 1 (Component)Zeaxanthin (yellow pigment) synthesis operon without PstI sites
BBa_K322123BBa_K322123 Version 1 (Component)Phycobilin synthesis operon without terminator
EYFPBBa_E0034 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
Restriction_sitesRestriction_sites Version 1 (Component)SacI - KpnI - SmaI - BamHI - XbaI - SalI - PstI - SphI - HindIII - NotI
BBa_I742122BBa_I742122 Version 1 (Component)Zeaxanthin (yellow pigment) synthesis operon
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_J61100BBa_J61100 Version 1 (Component)Ribosome Binding Site Family Member
fwYellowBBa_K1033910 Version 1 (Component)fwYellow, yellow chromoprotein
YFPBBa_K592101 Version 1 (Component)Yellow Fluorescent Protein (YFP)
BBa_J85600BBa_J85600 Version 1 (Component)attB1 recombination site
BBa_I742136BBa_I742136 Version 1 (Component)Lycopene (red pigment) producing operon without PstI sites
BBa_I742138BBa_I742138 Version 1 (Component)B-carotene (organge pigment) producing operon without PstI sites
amilGFPBBa_K592010 Version 1 (Component)amilGFP, yellow chromoprotein
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
BBa_K809601BBa_K809601 Version 1 (Component)GAL promoter (kozak) without start codon ATG
BBa_K1033916BBa_K1033916 Version 1 (Component)amajLime, yellow-green chromoprotein
BBa_K909000BBa_K909000 Version 1 (Component)Phycocyanobilin synthesis operon
BBa_K2180005BBa_K2180005 Version 1 (Component)Pigment Blue for B. subtilis with a LVA tail and restriction site (Blue Pigment)
BBa_I13457BBa_I13457 Version 1 (Component)Improved insertion site with two RNAse E cut sites
BBa_K395704BBa_K395704 Version 1 (Component)zeaxanthin synthesis operon (pBad+rbs+crtZ+plac+rbs +crtEBIY )
BBa_K1638016BBa_K1638016 Version 1 (Component)8 aa linker without BamHI restriction site and TEV recognition site
fwYellowBBa_K1033909 Version 1 (Component)fwYellow, yellow chromoprotein (incl RBS)
EYFPBBa_E0036 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
RBS_cassetteRBS_cassette Version 1 (Component)AvrII restriction site (cctagg), overlapped with RBS (aggagga)
BBa_I742133BBa_I742133 Version 1 (Component)CrtIB genes with PstI site mutated out
BBa_I742120BBa_I742120 Version 1 (Component)Lycopene (red pigment) producing operon
BBa_K1321005BBa_K1321005 Version 1 (Component)Synthetic Phytochelatin EC(20) RFC[25]
PstIBBa_K300981 Version 1 (Component)PstI restriction enzyme site
BBa_I746104BBa_I746104 Version 1 (Component)P2 promoter in agr operon from S. aureus