SynBioHub

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency

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BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

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BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

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BBa_J04500
BBa_J04500 Version 1 (Component)
IPTG inducible promoter with RBS

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BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

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sRNA_cassette
sRNA_cassette Version 1 (Component)

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sRNA_target
sRNA_target Version 1 (Component)

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pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

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BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

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T7 RBS
BBa_K1362090 Version 1 (Component)
strong T7 RBS

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RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

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BBa_K228001
BBa_K228001 Version 1 (Component)
SupD-tRNA

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BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

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BBa_K1114107
BBa_K1114107 Version 1 (Component)
Bicistronic Design RBS 2, MoClo Format with BC fusion sites

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//rbs
rbs Version 1 (Collection)

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BBa_K115002
BBa_K115002 Version 1 (Component)
RNA thermometer (FourU)

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RBS-spoVG
BBa_K143021 Version 1 (Component)
SpoVG ribosome binding site (RBS) for B. subtilis

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RBS_SpaR
RBS_SpaR Version (Component)

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RBS_SpaK
RBS_SpaK Version (Component)

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BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030

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RBS_SpaR_seq
RBS_SpaR_seq Version (Sequence)

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RBS_SpaK_seq
RBS_SpaK_seq Version (Sequence)

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BBa_K115001
BBa_K115001 Version 1 (Component)
RNA thermometer (ROSE)

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BBa_I2032
BBa_I2032 Version 1 (Component)
T7 RNA polymerase

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BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

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BBa_K1017402
BBa_K1017402 Version 1 (Component)
sRNA+rRBS-2

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RBS_cassette
RBS_cassette Version 1 (Component)
AvrII restriction site (cctagg), overlapped with RBS (aggagga)

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SYFP2
BBa_K864100 Version 1 (Component)
Super Yellow Fluorescent Protein 2 (SYFP2)

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eyfp
BBa_E0031 Version 1 (Component)
EYFP (RBS+ LVA-)

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BBa_K165002
BBa_K165002 Version 1 (Component)
Kozak sequence (yeast RBS)

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BBa_K1017404
BBa_K1017404 Version 1 (Component)
sRNA-2

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BBa_K117002
BBa_K117002 Version 1 (Component)
LsrA promoter (indirectly activated by AI-2)

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rRBS-2
BBa_K1017202 Version 1 (Component)
Regulation RBS-2

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BBa_K1763442
BBa_K1763442 Version 1 (Component)
MaSp1/2[1:2]-12(1C3)

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BBa_K1763438
BBa_K1763438 Version 1 (Component)
MaSp1/2[2:1]-12(1C3)

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ecfp
BBa_E0021 Version 1 (Component)
ECFP (RBS+ LVA-)

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BBa_K738002
BBa_K738002 Version 1 (Component)
Theophyline riboswitch regulated RNA Scaffold (clover vision 2)

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BBa_K1368011
BBa_K1368011 Version 1 (Component)
Spinach Aptamer 13-2 RNA with Stabilizing tRNA Scaffold

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BBa_K1486020
BBa_K1486020 Version 1 (Component)
rLuc[2]

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BBa_K1351029
BBa_K1351029 Version 1 (Component)
LMU Bacillus RBS collection 2

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BBa_K517005
BBa_K517005 Version 1 (Component)
erg20-2

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BBa_K1473002
BBa_K1473002 Version 1 (Component)
gRNA 2

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RBS-GFP-Te
BBa_I763020 Version 1 (Component)
RBS-GFP (+LVA Tag)-Terminators

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BBa_K115003
BBa_K115003 Version 1 (Component)
RNA thermometer (PrfA)

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BBa_K1323006
BBa_K1323006 Version 1 (Component)
sRNA (2): YFP-targeting molecule

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BBa_K079019
BBa_K079019 Version 1 (Component)
Lac 2 - operator library member

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