Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
GAL1BBa_J63006 Version 1 (Component)yeast GAL1 promoter
BBa_K863204BBa_K863204 Version 1 (Component)shuttle vector pECPP11JS for recombination of genes of interest in yeast
BBa_K863201BBa_K863201 Version 1 (Component)3' UTR site of alcohol oxidase 1 gene (aox1)
BBa_K863005BBa_K863005 Version 1 (Component)ecol laccase from E. coli with T7 promoter, RBS and His-tag
BBa_K863207BBa_K863207 Version 1 (Component)tvel5 integrated in shuttle vector pECPP11JS (BBa_K863204) for integration in yeast
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_K863208BBa_K863208 Version 1 (Component)tvel35 integrated in shuttle vector pECPP11JS (BBa_K863204) for integration in yeast
lexABBa_K864201 Version 1 (Component)LexA SOS response repressor
BBa_K863200BBa_K863200 Version 1 (Component)5' UTR site of alcohol oxidase 1 gene (aox1)
BBa_K863206BBa_K863206 Version 1 (Component)Mating factor alpha 1 with Kozak sequence
BBa_K863021BBa_K863021 Version 1 (Component)bhal laccase from Bacillus halodurans
BBa_K863205BBa_K863205 Version 1 (Component)GFP integrated in shuttle vector pECPP11JS (BBa_K863204) for integration in yeast
BBa_K863000BBa_K863000 Version 1 (Component)bpul (laccase from Bacillus pumilus) with T7 promoter, RBS and HIS tag
BBa_K863001BBa_K863001 Version 1 (Component)bpul laccase from Bacillus pumilus
BBa_K863006BBa_K863006 Version 1 (Component)ecol laccase from E. coli
BBa_K863020BBa_K863020 Version 1 (Component)bhal laccase from Bacillus halodurans with T7 promoter, RBS and His-tag
BBa_K863209BBa_K863209 Version 1 (Component)BBa_500002 integrated in shuttle vector pECPP11JS (BBa_K863204) for integration in yeast
BBa_K864202BBa_K864202 Version 1 (Component)MarR(G95S) super-repressor
BBa_K823004BBa_K823004 Version 1 (Component)Anderson promoter J23100
BBa_K763004BBa_K763004 Version 1 (Component)pLexA + Gene encoding ZsGreen1
SPtom40BBa_K809204 Version 1 (Component)signal peptide of Tom40
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
pSBBs4SBBa_K823024 Version 1 (Component)pSB<sub>Bs</sub>4S-P<i><sub>xyl</i></sub>: Integrative expression vector for <i>Bacillus subtilis</i
CBDcex(J61BBa_K863104 Version 1 (Component)Cellulose binding Domain from C. Fimi with const. Promotor and GFP
CBDcex(T7)BBa_K863103 Version 1 (Component)Cellulose binding Domain from Cellulomonas Fimi with Reporter GFP
CBDclos(J6BBa_K863114 Version 1 (Component)CBD of C. cellulovorans cellulose binding protein gene with const. Promoter (J23100+J61101) and GFP
TVEL5BBa_K1615067 Version 1 (Component)Laccase TVEL5 in RFC25
FurBO_11498 Version 1 (Component) BBa_K1673204BBa_K1673204 Version 1 (Component)T7 Endonuclase (Mutation Optimized)
BBa_K165002BBa_K165002 Version 1 (Component)Kozak sequence (yeast RBS)
BBa_K863203BBa_K863203 Version 1 (Component)AOX1 Terminator from Pichia pastoris
BBa_K863202BBa_K863202 Version 1 (Component)his4 gene from Pichia pastoris
gpSBBa_K836004 Version 1 (Component)Lysis inhibitor from Enterobacteria phage lambda (codon usage optimized for R. opacus)
BBa_K1632004BBa_K1632004 Version 1 (Component)fim switch[default ON](wild-type)
CBDcex(T7)BBa_K863102 Version 1 (Component)Cellulose binding Domain of C. Fimi Exoglucanase with T7, RBS, GS-Linker (Freiburg-Standard)
BBa_K864004BBa_K864004 Version 1 (Component)Low copy BioBrick standard vector
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K861200BBa_K861200 Version 1 (Component)XylR repressed promoter