SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

BBa_K844000
BBa_K844000 Version 1 (Component)
10x-Histidine (10x-His) Tag with double stop codon (TAATAA)

BBa_K1051003
BBa_K1051003 Version 1 (Component)
Stop codon free GFP in RFC[23] standard

BBa_K1051000
BBa_K1051000 Version 1 (Component)
Stop codon free RFP in RFC[23] standard

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

RFC105 Z
BBa_K1362421 Version 1 (Component)
C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z

BBa_K809601
BBa_K809601 Version 1 (Component)
GAL promoter (kozak) without start codon ATG

cre
BBa_K112102 Version 1 (Component)
Cre enzyme without start or stop codons

dCas 9
BBa_K1051800 Version 1 (Component)
protein dCas9.Two mutations,D10A and H841A,from Cas9 gene without stop codon.

His-Stop
BBa_K133133 Version 1 (Component)
His affinity tag-stop

BBa_K112101
BBa_K112101 Version 1 (Component)
Cre enzyme without stop codon

BBa_M36117
BBa_M36117 Version 1 (Component)
Stop Codon

BBa_K1051004
BBa_K1051004 Version 1 (Component)
Stop codon free mOrange in RFC[23] standard

RGD-His-St
BBa_K133036 Version 1 (Component)
RGD-His affinity tag-Stop

BBa_K1332002
BBa_K1332002 Version 1 (Component)
Histidine tag (8 AA) and RFP (without stop codon)

BBa_K1582030
BBa_K1582030 Version 1 (Component)
mTagBFP without stop codon

BBa_K1582037
BBa_K1582037 Version 1 (Component)
LC without stop codon

BBa_K1582039
BBa_K1582039 Version 1 (Component)
Thc_Cut1 without stop codon

BBa_K1582038
BBa_K1582038 Version 1 (Component)
FsC without stop codon

BBa_K1051053
BBa_K1051053 Version 1 (Component)
K1051001 (non stop codon ECFP + K1051006 (Stop codon + TBY-1 terminator)

BBa_K1051009
BBa_K1051009 Version 1 (Component)
e.coli terminator ilvGEDA_T with stop codon

BBa_K1051002
BBa_K1051002 Version 1 (Component)
Stop codon free EYFP in RFC[23] standard

BBa_K112100
BBa_K112100 Version 1 (Component)
Cre enzyme without start codon

BBa_K1601000
BBa_K1601000 Version 1 (Component)
Cytochrome C S.oneidensis without stop codon

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from λ phage

STOP
BBa_J176016 Version 1 (Component)
STOP

BBa_K1051001
BBa_K1051001 Version 1 (Component)
Stop codon free ECFP in RFC[23] standard

Stop
BBa_K1362437 Version 1 (Component)
Tripple A

BBa_K1601004
BBa_K1601004 Version 1 (Component)
Laccase T.Thermophilus (Bba_K863011) without stop codon

BBa_K112113
BBa_K112113 Version 1 (Component)
Ligase without start or stop codons

BBa_K1051502
BBa_K1051502 Version 1 (Component)
Sic1 mutation, non stop codon

aiiA
BBa_C0160 Version 1 (Component)
autoinducer inactivation enzyme aiiA (no LVA)

BBa_K1933011
BBa_K1933011 Version 1 (Component)
INPNC fused to 6xHis tag without stop codon

BBa_K112108
BBa_K112108 Version 1 (Component)
BglII endonuclease without start or stop codons

BBa_K1601001
BBa_K1601001 Version 1 (Component)
Cytochrome C Synechocystis sp without stop codon

BBa_I716210
BBa_I716210 Version 1 (Component)
BamHI endonuclease without start codon

BBa_K112107
BBa_K112107 Version 1 (Component)
BglII endonuclease without stop codon

BBa_K284031
BBa_K284031 Version 1 (Component)
Cre Recombinase without start codon