Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K165006BBa_K165006 Version 1 (Component)Zif268-HIV DNA-binding domain
Zif23BBa_R2000 Version 1 (Component)Promoter, Zif23 regulated, test: between
BBa_K165011BBa_K165011 Version 1 (Component)Zif268-HIV binding sites (3)
zif23BBa_C2001 Version 1 (Component)Zif23-GCN4 engineered repressor (+LVA, C2000 codon-optimized for E.coli)
Zif23BBa_R2002 Version 1 (Component)Promoter, Zif23 regulated, test: between and after
BBa_K323105BBa_K323105 Version 1 (Component)Zif268 zinc finger + linker
BBa_C2007BBa_C2007 Version 1 (Component)Zif268-GCN4.MalE
BBa_K165022BBa_K165022 Version 1 (Component)Zif268-HIV synthetic activator (untagged)
IFPBBa_K256008 Version 1 (Component)Infrared Protein (IFP 1.4)
BBa_K323125BBa_K323125 Version 1 (Component)Zif268:crtI
BBa_K887022BBa_K887022 Version 1 (Component)zif268+alss
BBa_K1855000BBa_K1855000 Version 1 (Component)Lpp-OmpA Zif268
BBa_K165064BBa_K165064 Version 1 (Component)Zif268-HIV activator
BBa_P2007BBa_P2007 Version 1 (Component)PoPS->Zif268-GCN4.MalE
BBa_P2005BBa_P2005 Version 1 (Component)Zif268-GCN4 protein generator
BBa_K323051BBa_K323051 Version 1 (Component)ATG cCFP link Zif268
BBa_K618212BBa_K618212 Version 1 (Component)pLAC ompA-zif268
BBa_K618112BBa_K618112 Version 1 (Component)pBAD ompA-zif268
Zif23BBa_R2001 Version 1 (Component)Promoter, Zif23 regulated, test: after
BBa_K887040BBa_K887040 Version 1 (Component)Plac+B0034+zif268+alss
BBa_K165073BBa_K165073 Version 1 (Component)Zif268-HIV repressor reporter
BBa_K165065BBa_K165065 Version 1 (Component)Zif268-HIV activable reporter
BBa_K165030BBa_K165030 Version 1 (Component)mCYC promoter plus Zif268-HIV binding sites
BBa_P2105BBa_P2105 Version 1 (Component)Zif268-GCN4 protein generator
BBa_C20091BBa_C20091 Version 1 (Component)MalE (deletion of Zif268.GCN4)
BBa_K1997004BBa_K1997004 Version 1 (Component)sGFP-N->Zif268->sGFP-C
BBa_C2034BBa_C2034 Version 1 (Component)Zif268 fingers 2 and 3
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K323034BBa_K323034 Version 1 (Component)Zif268 link nCFP stop T7 terminator
BBa_P2107BBa_P2107 Version 1 (Component)Zif268-GCN4.MalE protein generator
BBa_C2043BBa_C2043 Version 1 (Component)Zif268 fingers 2 and 3.Fos
BBa_C2044BBa_C2044 Version 1 (Component)Zif268 fingers 2 and 3.JunB
BBa_K1997014BBa_K1997014 Version 1 (Component)GFP10->Zif268->GFP11->RBS->GFP1-9
BBa_K323001BBa_K323001 Version 1 (Component)cYFP link Zif268 under T7 promoter
BBa_K165072BBa_K165072 Version 1 (Component)pMET25 + Zif268-HIV repressor on pRS304*
BBa_C2045BBa_C2045 Version 1 (Component)Zif268 fingers 2 and 3.JunD
BBa_K165091BBa_K165091 Version 1 (Component)Zif268-HIV bs + LexA bs + mCYC + Zif268-HIV repressor (mCherryx2 tagged) on pRS306
TnPBBa_J61023 Version 1 (Component)Tn5 Transposase [Tnp1-PN] (with PstI and NotI)
zif23BBa_C2000 Version 1 (Component)Repressor, Zif23-GCN4 (RBS-, LVA+)
BBa_K523008BBa_K523008 Version 1 (Component)INP for BioSandwich
BBa_K165023BBa_K165023 Version 1 (Component)Kozak + Zif268-HIV synthetic activator (untagged)
BBa_K323010BBa_K323010 Version 1 (Component)ATG cCFP link Zif268 link His stop
BBa_K165035BBa_K165035 Version 1 (Component)Gli1 bs + Zif268-HIV bs + mCYC promoter