Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_I741008
BBa_I741008 Version 1 (Component)
brings xylose into the cell (doesn

BBa_M36009
BBa_M36009 Version 1 (Component)
5' Bicistronic UTR (strong), does not include ATG start

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

ccdB
BBa_P1010 Version 1 (Component)
ccdB cell death gene

BBa_I741006
BBa_I741006 Version 1 (Component)
XylE low affinity xylose transporter

BBa_K1323014
BBa_K1323014 Version 1 (Component)
Xylose Inducible Promoter for Staphylococcus aureus

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

XylR
BBa_K143036 Version 1 (Component)
Xylose operon regulatory protein

BBa_K1323002
BBa_K1323002 Version 1 (Component)
dCas9: Expression cassette under a xylose inducible promoter

BBa_K1363004
BBa_K1363004 Version 1 (Component)
the downstream passway of the blue light system which can be transfered into Caulobacter crescentus

BBa_J33204
BBa_J33204 Version 1 (Component)
xylE reporter gene with rbs

BBa_K1444018
BBa_K1444018 Version 1 (Component)
Xylose -> comK

BBa_K624033
BBa_K624033 Version 1 (Component)
minC cell division inhibitor (revised)

BBa_K733002
BBa_K733002 Version 1 (Component)
<i>xylR</i>+<i>PxylA</i>: A xylose inducible promoter with its transcriptional regulator.

BBa_K1510119
BBa_K1510119 Version 1 (Component)
A truncated INPNC anchor protein that binds fragments on the cell surface

BBa_K1973002
BBa_K1973002 Version 1 (Component)
xylS2

ThiE
BBa_K558009 Version 1 (Component)
Thiamin monophosphate pyrophosphorylase

BBa_K823015
BBa_K823015 Version 1 (Component)
Pxyl, a xylose inducible promoter + its regulator XylR

BBa_K1431201
BBa_K1431201 Version 1 (Component)
NLS, lead protein into the nucleus

CHE
BBa_K256023 Version 1 (Component)
Cholesteryl Esterase (CHE)

BBa_K523026
BBa_K523026 Version 1 (Component)
xylA (E. coli xylose isomerase)

BBa_K1325005
BBa_K1325005 Version 1 (Component)
MinC??????cell division inhibitor

BBa_J47864
BBa_J47864 Version 1 (Component)
xylR = xylose transcriptional regulator

RBS-GFP-Te
BBa_I763020 Version 1 (Component)
RBS-GFP (+LVA Tag)-Terminators

BBa_M36001
BBa_M36001 Version 1 (Component)
5' Bicistronic UTR (medium), does not include ATG start

PN
BBa_K100000 Version 1 (Component)
Natural Xylose Regulated Bi-Directional Operator

Int1
BBa_S03444 Version 1 (Component)
--Specify Parts List--

P5
BBa_K100003 Version 1 (Component)
Edited Xylose Regulated Bi-Directional Operator 3

BBa_K090502
BBa_K090502 Version 1 (Component)
Gram-Positive Xylose-Inducible Promoter

BBa_K2008007
BBa_K2008007 Version 1 (Component)
Xylose->comK with AmyE homology