Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
OriTRBBa_J01003 Version 1 (Component)OriT-R (Origin of transfer for the R-plasmid nic region)
p15ABBa_I50032 Version 1 (Component)p15A replication origin
BBa_I714031BBa_I714031 Version 1 (Component)OriT-R (Origin of Transfer for the R751-plasmid nic region)
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_K640002BBa_K640002 Version 1 (Component)oriT - Interspecies origin of transfer
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
OriTFBBa_J01002 Version 1 (Component)OriT-F (Origin of Transfer for the F-plasmid nic region)
OriT-RP4BBa_K125320 Version 1 (Component)OriT-RP4 (Origin of transfer for the RP4 plasmid)
BBa_I714032BBa_I714032 Version 1 (Component)OriT-S (Origin of Transfer for the pSC101-plasmid nic region)
BBa_I714030BBa_I714030 Version 1 (Component)OriT-F (Origin of Transfer for the F-plasmid nic region)
R6KBBa_J61001 Version 1 (Component)[R6K] Origin of replication
OriTRP4BBa_K1439000 Version 1 (Component)Origin of transfer for the RP4-plasmid nic region.
f1 oriBBa_K314110 Version 1 (Component)f1 origin
BBa_K640004BBa_K640004 Version 1 (Component)Device for conjugation of plasmids from E. coli to pseudomonas
BBa_K1510119BBa_K1510119 Version 1 (Component)A truncated INPNC anchor protein that binds fragments on the cell surface
BBa_K1510409BBa_K1510409 Version 1 (Component)A Steptococcus Mutants adhesive complex.
oriTr/LacZBBa_K125350 Version 1 (Component)oriTr with lac promoter and lacZ
oriT/LacZBBa_K125360 Version 1 (Component)oriT with lac promoter and lacZ
BBa_I714000BBa_I714000 Version 1 (Component)R388 oriT ( transfer origin of E.coli IncW group R388 plasmid)
BBa_K1510915BBa_K1510915 Version 1 (Component)ketoisocaproate decarboxylase (THI3) Circuit
BBa_K1053124BBa_K1053124 Version 1 (Component)Split EYFP C-terminal domain fused with λN peptide
BBa_K1053123BBa_K1053123 Version 1 (Component)Split EYFP N-terminal domain fused with HTLV-1 Rex peptide
BBa_K1682014BBa_K1682014 Version 1 (Component)Conjugation(RP4) plasmid with partial GFP
BBa_K1510603BBa_K1510603 Version 1 (Component)Dispersin generator ,with constitutive promoter plus yebf
BBa_K1510624BBa_K1510624 Version 1 (Component)Truncated lysostaphin coding sequence plus strong promoter and yebf
BBa_K1510904BBa_K1510904 Version 1 (Component)Truncated lysostaphin coding circuit
BBa_K543032BBa_K543032 Version 1 (Component)assay system of killing by conjugation
BBa_K543016BBa_K543016 Version 1 (Component)Bacteriophage Lysis Cassette S105, R, and Rz under Tet promoter (conjugative)
BBa_I714003BBa_I714003 Version 1 (Component)minimum oriT of plasmid R64 ( origin of transfer, R64 is IncI-1 )
BBa_K873003BBa_K873003 Version 1 (Component)conjugative transfer of RFG