iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_J85600BBa_J85600 Version 1 (Component)attB1 recombination site
BBa_I15008BBa_I15008 Version 1 (Component)heme oxygenase (ho1) from Synechocystis
BBa_I15009BBa_I15009 Version 1 (Component)phycocyanobilin:ferredoxin oxidoreductase (PcyA) from synechocystis
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
RS1BBa_K743000 Version 1 (Component)Synechocystis PCC6803 neutral recombination site.
RS2BBa_K743001 Version 1 (Component)Synechocystis PCC6803 neutral recombination site.
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
FurBO_11498 Version 1 (Component) psb1C3_intBBa_K743006 Version 1 (Component)psb1C3_IntK recombination plasmid for Synechocystis PCC6803
psb1C3_intBBa_K743007 Version 1 (Component)psb1C3_IntKR recombination plasmid for Synechocystis PCC6803
psb1C3_intBBa_K743008 Version 1 (Component)psb1C3_IntKR recombination plasmid for Synechocystis PCC6803
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_I13507BBa_I13507 Version 1 (Component)Screening plasmid intermediate
BBa_K1424000BBa_K1424000 Version 1 (Component)Prefix homologous recombination for Synechocystis ("Left flank")
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
BBa_K125100BBa_K125100 Version 1 (Component)nir promoter from <I>Synechocystis</I> sp. PCC6803
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
PCaa3BBa_K743002 Version 1 (Component)PCaa3 promoter and native rbs from Synechocystis PCC6803
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
BBa_I13504BBa_I13504 Version 1 (Component)Screening plasmid intermediate
BBa_K592001BBa_K592001 Version 1 (Component)CcaS, green light sensor from Synechocystis sp. PCC6803
psb1C3_IntBBa_K743010 Version 1 (Component)psb1C3_IntS recombination plasmid with RFP
BBa_K1424003BBa_K1424003 Version 1 (Component)Kanamycin resistance for Synechocystis
BBa_K906201BBa_K906201 Version 1 (Component)Psl2131 (for Synechocystis homologous recombination)
BBa_K1424001BBa_K1424001 Version 1 (Component)Suffix homologous recombination for Synechocystis ("Right flank")
BBa_K125502BBa_K125502 Version 1 (Component)phaB BioPlastic polyhydroxybutyrate synthesis pathway (origin PCC6803 slr1993)
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
OriTRBBa_J01003 Version 1 (Component)OriT-R (Origin of transfer for the R-plasmid nic region)
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
BBa_K743003BBa_K743003 Version 1 (Component)Pta promoter and native rbs from Synechocystis PCC6803
BBa_K510000BBa_K510000 Version 1 (Component)pUC18Sfi-miniTn7BB-Gm
BBa_K1945001BBa_K1945001 Version 1 (Component)Homologous Recombination Plasmid for Synechocystis sp. PCC 6803
psb1C3_intBBa_K743009 Version 1 (Component)psb1C3_IntKR recombination plasmid with RFP under psaAB promoter
psb1C3_intBBa_K743016 Version 1 (Component)psb1C3_IntKR recombination plasmid with RFP under psbA2 promoter