Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
eyfpBBa_E0030 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
GFP reportBBa_E0240 Version 1 (Component)GFP generator
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
YFPBBa_E0032 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
ECFPBBa_E0022 Version 1 (Component)enhanced cyan fluorescent protein derived from A. victoria GFP
TAT-trojanBBa_K792003 Version 1 (Component)Import enhancer - HIV TAT penetratin (trojan peptide)
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
PolyarginiBBa_K792004 Version 1 (Component)Import enhancer - Polyarginine (trojan peptide)
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
EYFPBBa_E0034 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
CatBBa_I14033 Version 1 (Component)P(Cat)
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_K792009BBa_K792009 Version 1 (Component)Yeast exportable His-rich peptide w/enhanced import (1)
BBa_K380000BBa_K380000 Version 1 (Component)TAT cell-penetrating peptide
BBa_J04031BBa_J04031 Version 1 (Component)GFP w/LVA tag
HinBBa_J31000 Version 1 (Component)DNA-invertase Hin from Salmonella typhimurium
HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
BBa_K817021BBa_K817021 Version 1 (Component)RBS-SP1-Penetratin-Flag
BBa_K380001BBa_K380001 Version 1 (Component)N-part TAT cell-penetrating peptide
BBa_K792011BBa_K792011 Version 1 (Component)Yeast exportable His-rich peptide w/enhanced import (2)
BBa_E2030BBa_E2030 Version 1 (Component)enhanced version of EYFP, yeast-optimized
eGFP+HisBBa_K193202 Version 1 (Component)EGFP(enhanced Green Fluorescent Protein) with His tag
BBa_K817022BBa_K817022 Version 1 (Component)RBS-SP2-Penetratin-Flag
BBa_K817023BBa_K817023 Version 1 (Component)RBS-SP3-Penetratin-Flag
NLSBBa_J176008 Version 1 (Component)NLS
BBa_I712015BBa_I712015 Version 1 (Component)HIV-1 protease cleavage site
BBa_J36835BBa_J36835 Version 1 (Component)Lipoprotein signal peptide
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
BBa_K817024BBa_K817024 Version 1 (Component)RBS-SP1-Penetratin-Flag-xx
PESTBBa_J176018 Version 1 (Component)PEST
pLux/TetBBa_K176000 Version 1 (Component)pLux/Tet Hybrid Promoter: (LuxR+,TetR-)->PoPS
HABBa_I712008 Version 1 (Component)HA affinity tag
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
HisTagBBa_K792005 Version 1 (Component)Histidine rich peptide (His Tag)
BBa_K380002BBa_K380002 Version 1 (Component)LMWP cell-penetrating peptide
BBa_K380004BBa_K380004 Version 1 (Component)Tp10 cell-penetrating peptide
ECFPBBa_E0024 Version 1 (Component)enhanced cyan fluorescent protein derived from A. victoria GFP