Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
ecfpBBa_E0020 Version 1 (Component)engineered cyan fluorescent protein derived from A. victoria GFP
BBa_K563054BBa_K563054 Version 1 (Component)Vector pYD, and can transfer into nucles of S.cerevisivae
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
ECFPBBa_E0022 Version 1 (Component)enhanced cyan fluorescent protein derived from A. victoria GFP
OriTRBBa_J01003 Version 1 (Component)OriT-R (Origin of transfer for the R-plasmid nic region)
CatBBa_I14033 Version 1 (Component)P(Cat)
BBa_P10598BBa_P10598 Version 1 (Component)GoldenBraid destination vector omega insert
BBa_P10599BBa_P10599 Version 1 (Component)GoldenBraid destination vector alpha insert
BBa_K1321338BBa_K1321338 Version 1 (Component)T7 Expression vector
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
BBa_I714031BBa_I714031 Version 1 (Component)OriT-R (Origin of Transfer for the R751-plasmid nic region)
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_J61002BBa_J61002 Version 1 (Component)EX-Ptet-S-rbsRFP-P "RFP reporter"
BBa_K873003BBa_K873003 Version 1 (Component)conjugative transfer of RFG
OriT-RP4BBa_K125320 Version 1 (Component)OriT-RP4 (Origin of transfer for the RP4 plasmid)
BBa_K563053BBa_K563053 Version 1 (Component)vector pYE, designed for inducible expression of recombinant proteins in S.cerevisivae.
BBa_K1363004BBa_K1363004 Version 1 (Component)the downstream passway of the blue light system which can be transfered into Caulobacter crescentus
BBa_K209399BBa_K209399 Version 1 (Component)AarI A-D acceptor vector
BBa_I714032BBa_I714032 Version 1 (Component)OriT-S (Origin of Transfer for the pSC101-plasmid nic region)
OriTRP4BBa_K1439000 Version 1 (Component)Origin of transfer for the RP4-plasmid nic region.
OriTFBBa_J01002 Version 1 (Component)OriT-F (Origin of Transfer for the F-plasmid nic region)
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
BBa_K640004BBa_K640004 Version 1 (Component)Device for conjugation of plasmids from E. coli to pseudomonas
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
BBa_K1510119BBa_K1510119 Version 1 (Component)A truncated INPNC anchor protein that binds fragments on the cell surface
BBa_K1510409BBa_K1510409 Version 1 (Component)A Steptococcus Mutants adhesive complex.
oriTr/LacZBBa_K125350 Version 1 (Component)oriTr with lac promoter and lacZ
BBa_K902019BBa_K902019 Version 1 (Component)S7 micrococcal nuclease
oriT/LacZBBa_K125360 Version 1 (Component)oriT with lac promoter and lacZ