Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1AK8pSB1AK8 Version 1 (Component)Eukaryotic terminator vector (formerly BBa_J52017)
ScreeningpSB1A10 Version 1 (Component)Screening Plasmid v1.0
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB3K3pSB3K3 Version 1 (Component)Low to medium copy BioBrick standard vector
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB2K3pSB2K3 Version 1 (Component)Inducible copy number BioBrick plasmid
BBa_K323162BBa_K323162 Version 1 (Component)Zif268_vioB in pSB1AK3
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
pSB1AK3-1pSB1AK3_1 Version 1 (Component)PSB1AK3 with ccdB insert
pSB1AC0pSB1AC0 Version 1 (Component)pSB1AC0
pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
pSB1T3pSB1T3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
pSB1A2BBa_K300988 Version 1 (Component)pSB1A2 without Prefix and Suffix
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
NosZ+SYFPBBa_K1866001 Version 1 (Component)NosZ gene+SuperYellowFluorescenceProtein (in pSB1A3)
P+RBS+NrFABBa_K1866000 Version 1 (Component)Promoter+RibosomeBindingSite+NrfA (in pSB1A3)
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
BBa_K1985016BBa_K1985016 Version 1 (Component)AraC-pBAD in pSB1A3
BBa_K784023BBa_K784023 Version 1 (Component)MCS in pSB1C3
BsaI ->BBa_K1362425 Version 1 (Component)BsaI restriction site for RFC[???] cloning (in part in prefix)
BBa_K309020BBa_K309020 Version 1 (Component)eCFP (for use in C. elegans chassis)
BBa_K1743000BBa_K1743000 Version 1 (Component)Plastocyanin variant #1 in pSB1C3
BBa_K1743003BBa_K1743003 Version 1 (Component)Plastocyanin variant #3 in pSB1C3
pSB1AK3FBBa_J18902 Version 1 (Component)pSB1AK3F construction plasmid for protein fusion BioBricks
pSB1A30BBa_K1362091 Version 1 (Component)pSB1A30: High copy BioBrick cloning/expression backbone carrying Amp resitance
HerEBBa_K1615045 Version 1 (Component)Heroin Esterase in RFC25
BBa_K117000BBa_K117000 Version 1 (Component)Lysis gene (promotes lysis in colicin-producing bacteria strain)
BBa_K306000BBa_K306000 Version 1 (Component)omcBET in pSB1C3
BBa_K1866004BBa_K1866004 Version 1 (Component)Promoter+RibosomeBindingSite+NosZ+SuperYellowFluorescenceProtein (in pSB1A3)
BBa_K1866003BBa_K1866003 Version 1 (Component)Promoter+RibosomeBindingSite+Sqr gene (in pSB1A3)
BBa_K1051004BBa_K1051004 Version 1 (Component)Stop codon free mOrange in RFC[23] standard
BBa_K1489002BBa_K1489002 Version 1 (Component)Lpp-OmpA-Linker (pSB1C3)
pSB1AK3XBBa_J18905 Version 1 (Component)pSB1AK3X Freiburg Fusion -> BioFusion conversion plasmid
BBa_K1743013BBa_K1743013 Version 1 (Component)Plastocyanin variant #3 in pSB1C3