SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
p(tetR)BBa_R0040 Version 1 (Component)TetR repressible promoter
tetRBBa_C0040 Version 1 (Component)tetracycline repressor from transposon Tn10 (+LVA)
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
luxrBBa_C0062 Version 1 (Component)luxR repressor/activator, (no LVA?)
lux pRBBa_R0062 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pR)
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
cI+luxRBBa_R0065 Version 1 (Component)Promoter (lambda cI and luxR regulated -- hybrid)
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
LuxRBBa_I0462 Version 1 (Component)luxR Protein Generator
BBa_M1617BBa_M1617 Version 1 (Component)loXf+tetP+RBS+cre+ssRa+stop+loXr
CreBBa_J61047 Version 1 (Component)Cre DNA recombinase
BBa_P0440BBa_P0440 Version 1 (Component)PoPS -> TetR [S0151]
lux pLBBa_R0063 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pL)<br>
PspaSPspaS_core Version (Component) pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
RFC105 ZBBa_K1362421 Version 1 (Component)C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z
tetRBBa_Q04400 Version 1 (Component)QPI (B0034.C0040.B0015.R0040)
pLux/TetBBa_K176000 Version 1 (Component)pLux/Tet Hybrid Promoter: (LuxR+,TetR-)->PoPS
T7 RBSBBa_K1362090 Version 1 (Component)strong T7 RBS
BBa_K176028BBa_K176028 Version 1 (Component)TetR repressible AHL->PoPS Receiver (Very High LuxR): pCon 0.70->luxR+pLux/Tet->PoPS
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_C0261BBa_C0261 Version 1 (Component)AHL-making Enzyme, luxI (+RBS)
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
BBa_J09855BBa_J09855 Version 1 (Component)Constitutive luxR device with pLuxR
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
//rbsrbs Version 1 (Collection) BBa_K199200BBa_K199200 Version 1 (Component)pLac-RBS-ATG-loxP-STOP-loxP
RBS-spoVGBBa_K143021 Version 1 (Component)SpoVG ribosome binding site (RBS) for B. subtilis
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K199202BBa_K199202 Version 1 (Component)pLac-RBS-ATG-loxP-STOP-loxP-TetA
BBa_K1641014BBa_K1641014 Version 1 (Component)Up-side-down RBS::mcherry-ssra with loxP recognition sites.
BBa_J13002BBa_J13002 Version 1 (Component)TetR repressed POPS/RIPS generator
BBa_E0430BBa_E0430 Version 1 (Component)EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)
pREBBa_K116603 Version 1 (Component)pRE promoter from λ phage